Bordetella holmesii ATCC 51541: D560_1126
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Entry
D560_1126 CDS
T03052
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family protein
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
bho
Bordetella holmesii ATCC 51541
Pathway
bho02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
D560_1126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bho03021
]
D560_1126
Transcription machinery [BR:
bho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D560_1126
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
HTH_23
Sigma70_r4
HTH_11
HTH_29
HTH_28
HTH_Tnp_ISL3
HTH_AsnC-type
HTH_38
GerE
HTH_24
PhyR_sigma-like
NirdL-like_HTH
HTH_10
HTH_22
Motif
Other DBs
NCBI-ProteinID:
AHV94920
LinkDB
All DBs
Position
complement(1070279..1070815)
Genome browser
AA seq
178 aa
AA seq
DB search
MSSIPPAAVSAMHTLYSDNHGWLLGWLRRRVGDPFDAADLMQDTFVRVLKSHTGRCGEAS
AGPVAEIREPRAYLATIAKSLMIDFFRRQALERTYLEVLAALPPQEVPSLETQAVLRSAL
IEIDAMLDGLGLKVKQAFLMAQCEDLPYAEIARRLGVSRRSVDNYLARAMAHCCLLLP
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
gtgtccagcattcctcccgctgccgtatcagcgatgcatacgctttacagcgacaaccat
gggtggctgttggggtggttgcgccgtcgcgtgggcgatccgttcgacgcggcggatctg
atgcaggacaccttcgtcagggtgctgaagtcgcataccggtcgatgtggcgaagccagc
gccggccccgtcgctgagattcgggaaccgcgcgcttaccttgcgaccatcgccaaaagc
ctgatgatcgattttttccggcgccaggcgctggagcgaacctatctcgaagtcttggcc
gcactcccgccgcaggaggtgccttcgctcgaaacgcaggccgtgttgcgcagcgccttg
atcgagatcgacgccatgctcgacggactcggattgaaggtcaagcaggccttcttgatg
gcgcagtgcgaagacctgccctatgccgagattgcccgccgtctgggggtgtcgcgtcgc
agcgtggataattatctggcgcgcgccatggcgcattgctgtttgctcttgccgtga
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