Bordetella holmesii ATCC 51541: D560_1975
Help
Entry
D560_1975 CDS
T03052
Name
(GenBank) RNB domain protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
bho
Bordetella holmesii ATCC 51541
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bho03016
]
D560_1975
Enzymes [BR:
bho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D560_1975
Transfer RNA biogenesis [BR:
bho03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
D560_1975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_P-MRP_p29
UPF0158
Motif
Other DBs
NCBI-ProteinID:
AHV92684
LinkDB
All DBs
Position
complement(1853818..1855698)
Genome browser
AA seq
626 aa
AA seq
DB search
MYVFYEDDGSFKAGNILSETDASLQVESESGKRSKITRANTLFNFAAPEPAVLMREASAL
AEGIDLAFLWECAPQEEFDAPVLAADYFGHAPSAVEQAALLMRLHGAPVYFHRRGKGHYR
PAPPDILQAALAALDKKQRQAEQQQAWVDDMAQGKLPEEIGQMAEALLVRPDKNTMQWKA
LDAACARLQKSPDRLLLELGAWPNALALHKQRFLAVNFPRGVGFPEISIPPVQQDLPLAD
AEIYSIDDVTTTEIDDALSVTRLPDGRVRVGIHVAAPGLAVTRGSDLDKLARQRLSTVYM
PGDKIPMQPDSVIQTFSLDAGREVPALSLYVTADPVTGEIIASDTRVERIVVRENLRHNQ
LDTQVTEAALADPDAALPYGDWLRPLWQLAQALSAQREIVRGKPENNSRVEYSFYLDGDP
DNPDTPVRLVPRQRNAPLDRMVAEYMILANNLWGGLLHQHGVPGIYRSQQAGRVRMSTQA
LPHEAIGVPQYAWSTSPLRRYVDLVNQWQLIAAVQNGVSARLVAPFKPKDADLFAIIGAF
DAQYAAWADFQNAMERYWCLRWLRQQNISRGVAHVLRDDLVRLGNAPLVTRVGGLPELER
GAAVEIDIMGMDELSLELDCRYLGPA
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtacgtgttttacgaagatgacggcagtttcaaagccggcaatatcctgtcggaaacc
gacgccagcctgcaggtggagtcggagtcgggcaagcgcagcaaaataacgcgcgccaat
acgctgttcaactttgccgcgcccgagccggccgtgctcatgcgcgaggcctccgctctg
gccgaaggcatcgatctggcgtttctatgggaatgcgcgccccaggaagaattcgacgca
ccggtgttggctgccgattattttggccacgcccccagcgccgtcgaacaggcggccctg
ctgatgcggctgcatggcgcgccggtatattttcatcgacgcggcaaaggccactaccgt
ccggcgccgcccgacatccttcaggcggcgctggctgcgctggataaaaagcagcgccag
gccgagcagcagcaagcctgggtcgacgacatggcccagggcaagctgcccgaagaaatc
ggccagatggccgaagcccttctggtgcgcccggacaagaacaccatgcaatggaaggcg
ctggatgccgcttgcgcccgcttgcagaaaagccccgaccggctgctgctggagctgggc
gcctggcccaatgcgctggcgctgcacaagcaacgctttctggcggtcaatttcccgcgt
ggtgtgggtttcccggagatcagcatcccgccggtgcagcaggacctgccgctggccgac
gccgagatctattcgatcgatgacgtcaccaccaccgagatcgacgatgcgctgtcggtg
acgcgcctgcccgatggccgcgtgcgcgtgggcatccacgtcgccgcgccgggtctggcg
gtcacgcgcggcagcgacctggacaagctggcgcgccagcgcctgtccacggtctacatg
ccgggcgacaaaattccgatgcagcccgactcggtcattcaaaccttttcgctggacgcc
ggacgcgaagttccggcgctgtcgctctacgtcacggccgacccggtcaccggcgagatc
atcgcgtcggacacgcgtgtcgaacgtatcgtggtgcgtgagaacctgcgccacaaccag
ctcgacacccaggtcaccgaggccgcactggccgatcccgacgccgcattgccctacggc
gactggctgcgccccttgtggcaactggctcaggctctgtcggcgcaacgcgagatcgtg
cgcggcaagcccgagaacaacagccgcgtcgagtacagcttctacctggatggcgacccc
gacaacccggataccccggtgcgtctggtgccgcgccagcgtaatgcgccgctcgaccgc
atggtggccgagtacatgatcctggccaataacctgtggggcggtttgttgcaccaacac
ggtgtaccgggcatctatcggtcccagcaagccggccgagtacgtatgagcacccaggcg
ctcccgcacgaagccatcggcgtgccgcagtacgcctggagcacttcgccgttgcgccgc
tatgttgacctggtcaatcaatggcaattgatcgctgccgtgcagaacggcgtctcggca
cgattggtcgcgcccttcaagcccaaggacgccgacctgtttgccatcatcggcgccttc
gacgcgcagtacgccgcctgggctgacttccagaacgccatggaacgctactggtgcctg
cgctggctgcgtcagcaaaacatcagccgaggggtcgcccatgtgctgcgcgacgatctg
gtgcggttgggcaatgcgccgctggtgacacgcgtgggcggcctgcccgagctcgagcgc
ggcgccgccgtggagatcgacatcatgggtatggacgaactctcgctggagctggactgc
cgctacctcggtccggcatga
DBGET
integrated database retrieval system
