Bordetella holmesii ATCC 51541: D560_2192
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Entry
D560_2192 CDS
T03052
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family protein
KO
K03086
RNA polymerase primary sigma factor
Organism
bho
Bordetella holmesii ATCC 51541
Pathway
bho02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
D560_2192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bho03021
]
D560_2192
Transcription machinery [BR:
bho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D560_2192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r1_2
SPO22
SHOCT
TMPIT
DUF720
Motif
Other DBs
NCBI-ProteinID:
AHV93369
LinkDB
All DBs
Position
2051913..2054039
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AA seq
708 aa
AA seq
DB search
MTKSTGKTSSAIEAADASSTTASKRAVSMAAEKAPAKTAVKVAKTATKTAAKKAAKPAAA
AGEKTTKVRAKKAEDKLADLVGAPAAGRVPSGRRPGRPAKNANNDSDSFDDAMDGEGEVV
PDFKPAKRGGKRGKGDPKELLARGPVSPEEYEARRNRLKQLIKLGKDRGYLTYGEINDHL
PDDLVDAEAIDGIISTFSDMGISVYDQAPDAETLLMSENAPVASNDDDVEDEAEAALTTV
DSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAH
ATRVRESQAQIDEVVDGLVDPEDGEEYAGAGVSADEDEGDDGPAGGMSSKQLEDLRVKAL
AKFDEVSKQFDRMRQSYEKDGYRSEIYVTAQETIQNELMGIRFTAKMVEKLADTLRNQVE
EVRQLERAVLHTCVDRAGMPRSHFLKVFPGNETNLQWIIEEVAAGHPYAETLERQIPAVQ
ELQQKLIDLQTRVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRG
LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE
TINKMNRISRQILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDSH
LGDFIEDTSTLAPSDAALHGSMRDVVKEVLDSLTRVKPRFCACVLVSK
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaatccaccggcaaaacctcatctgcgatcgaagcggctgacgcctcctccacg
acggcttctaagcgggccgtcagcatggcggcggaaaaagcgcccgccaagacggcggtg
aaggtcgccaagaccgcaaccaagacagcggccaaaaaggctgccaagccggctgctgct
gcaggtgaaaaaactaccaaggtacgagccaagaaggccgaagacaaactggctgatctg
gtcggcgcgcccgctgcagggcgtgtgcccagcggccgtcgccccggacgcccggccaag
aatgccaacaacgatagcgactcctttgacgatgcaatggacggcgaaggcgaagtcgtg
cctgacttcaagccggccaagcgtggaggcaagcgtggcaagggagatcccaaagagctc
ctggcccgcggccccgtctcgcccgaggaatatgaagctcgccgcaaccgcctcaagcag
ctgatcaagctgggcaaagaccgcggctaccttacttacggcgaaatcaacgatcatctg
ccagacgatctggtcgacgccgaggccatcgacggcatcatcagtaccttcagcgacatg
ggtatctcggtctatgaccaagccccggacgccgaaacgctgctgatgagcgaaaacgcg
cctgtggcttccaacgacgacgacgtcgaggatgaggccgaagccgcgctgactacggtt
gattctgacttcggccgcaccaccgaccctgtgcgtatgtacatgcgcgaaatgggctcg
gtagagttgctcacgcgtgaaggcgaaattgaaatcgccaagcgaatcgaagatggcctc
aagcacatggtcatggccatttccgcttgtcccactaccatcaacgaaatccttgcccat
gccacccgcgtgcgcgaaagccaggcgcagatcgacgaggtcgtcgacggtctggtcgat
ccggaagacggcgaagagtacgctggcgcgggtgtgagcgccgacgaagacgagggcgat
gatggcccggccggcggcatgtccagcaagcagctggaagacctgcgcgtcaaggccttg
gctaagttcgatgaggtgtccaagcagttcgatcgcatgcgccagtcgtacgaaaaagac
ggctatcgctccgaaatctacgtcacggcccaggagaccatccagaacgagctgatgggt
atccgcttcacggccaagatggtcgagaagctggccgatacgctgcgcaaccaggtcgaa
gaggttcgtcagctcgagcgtgccgtgctccacacctgcgtggatcgtgccggcatgccg
cgctcgcacttcctgaaagtcttccccggcaacgaaaccaatctgcagtggatcatcgag
gaggtggctgcgggtcacccctatgccgagacactggaacgccagatcccagccgtgcag
gagttgcagcaaaagcttattgacctgcaaacgcgcgtcgtgctgccgctcaaggacctc
aaggatgtcaataagcgcatggccactggcgaagccaaggctcgcaaggccaagcgcgaa
atgaccgaggccaacttgcgcctggtcatctccattgccaagaagtacaccaaccgaggt
ctgcagttcctggatctgatccaggaaggcaacatcggtttgatgaaggcggtggataag
ttcgaataccgccgtggctataagttctcgacctatgccacctggtggattcgccaggcc
attacgcgttctatcgccgaccaggcgcgtaccatccgtatcccggttcacatgatcgaa
acgatcaacaagatgaaccggatcagccgtcagattctgcaggaaacgggtgccgagccc
gatccggcaactctggcgcagaagatggacatgcctgaggataaaatccggaagatcctg
aagatcgccaaagaaccgatctccatggaaacgccgatcggcgacgatgatgactcacat
ctgggtgatttcatcgaggatacgtcgaccctggcgccttcggacgcggcgctgcatggt
tccatgcgcgatgtcgtcaaagaagtgttagactccctgacccgcgtgaagccaaggttt
tgcgcatgcgttttggtatcgaaatga
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