Bordetella holmesii ATCC 51541: D560_2566
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Entry
D560_2566 CDS
T03052
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bho
Bordetella holmesii ATCC 51541
Pathway
bho03030
DNA replication
bho03430
Mismatch repair
bho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D560_2566
03430 Mismatch repair
D560_2566
03440 Homologous recombination
D560_2566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bho03032
]
D560_2566
03400 DNA repair and recombination proteins [BR:
bho03400
]
D560_2566
Enzymes [BR:
bho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
D560_2566
DNA replication proteins [BR:
bho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
D560_2566
DNA repair and recombination proteins [BR:
bho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
D560_2566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AHV91795
LinkDB
All DBs
Position
2403432..2406923
Genome browser
AA seq
1163 aa
AA seq
DB search
MSEAATNPPPFVHLRVHSEFSVVDGIVRISDLIKRVARMGQPAVALTDLSNIFGLIKFYK
NARGAGIKPIAGCDVWLSNDEDRDKPFRALLLVRNHQGYLNLCELLSQSFLLNQYKGRAE
LRREWLQGQEGLIVLSGGRAGDIGHALDAGNTVAALALARQWGEMFPGAFYIELQRAGMD
GDEAYTQAAMRLAAEAGLPVVATHPVQFLDREEFQAHEARVCIAEGEILADPRRVKRFTP
QQYLQSSQEMQARFADVPSALANTIEIAKRCNLSLVLGKPRLPIFPTPEGVTLDDYLVQL
SEEGLEKRLAFLFPEQAERDRQRDTYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNG
VPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVI
EYVKTKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSKLIPFNPADPWSLER
TLKDEPAFKERYEQEEEVRALVDLARPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPG
QENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNADKRDFDIMALALDDP
AAYKVLCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRPGPLESGMVDDFVNR
KHGRAAVDYFHPDLEGTLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEE
MAKHRELFQQGAQEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAYHP
AEFLAATLSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNASGYRFAPVEDEHTAHGRPPRT
MRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVSKHAVNRRTIEALIRAGAFDT
IESNRAAMLASVGTAMEAAEQAARSVNQASLFGDDSGDVVAGELAKVAPWNLHTRLTEEK
AALGYYFSGHLFDAWRDEVRRIVPMPLARIEPQRDLQWMCGVLAGVRVMMTRRGKMVFAV
LDDGTAQVEISVFNELFEKHRNRLKEDQLLIVQGKVSNDEYSGGMRIVAENLFDLQLARE
ARARALRITLNGQADAARLRQLLNPFRAEPENGIPGVPVDVIYRKDNFLCTVRLGQEWRV
RMADTLLENLALWAQPDGVEVSY
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagccgcaacaaatccgcccccttttgtacatctgcgcgttcactccgagttt
tcggtcgtggacggtatcgtgcgtatttccgacttgatcaagcgtgtggccagaatgggc
cagccggcagtcgccctgaccgatctttcgaatattttcggtctgatcaagttctataaa
aacgcccgtggcgctgggatcaagcccatcgcggggtgtgatgtctggctcagcaacgac
gaagaccgcgacaagccatttcgcgcgttgctgctggtacgcaatcaccaaggctatctc
aacctttgcgaactcctgtcgcaatcgtttctgctgaatcagtacaaaggccgggccgag
ttgcggcgtgaatggctgcagggacaggaagggttgatcgtgctgtctggtgggcgggcc
ggcgacatcggccatgcgttggacgcaggcaatacggtcgccgccctggcgctggcgcgc
caatggggggagatgttccccggcgctttctacatcgaactgcagcgcgccggtatggat
ggcgacgaggcgtatacccaggcagccatgcggctggccgccgaagcggggctgccggtg
gtggccacccacccggtgcagttcctggaccgcgaagagttccaggctcacgaggcgcgc
gtatgtatcgccgagggtgaaatcctggccgatccgcgccgggtcaagcgtttcacaccg
cagcaatatttgcaaagttcgcaggagatgcaggcccgttttgcggacgtgccttcggcc
cttgccaatacgatagagattgccaaacgctgcaatctgtcgctggtgctgggcaagcct
cggctgcccatcttccccacccctgagggcgtgaccctggacgattatctcgtgcagctg
tccgaagaggggctggagaagcggctggcttttctgtttccggagcaggccgagcgggac
cggcagcgcgacacctattacgagcgcctgcgctgggagtgcaaaaccatcatccagatg
ggctttcccggttacttcctgatcgtgcaggacttcatcaactggggcaagaacaacggc
gtgcctgtggggccgggtcggggttcgggtgcgggctcgctggtggcctatgccttgggg
atcaccgatctggaccccattcgctacgatttgctgttcgagcgcttcctgaatccggag
cgggtatccatgcccgacttcgatatcgacttctgccaggacaaccgcgaacgcgtcatc
gagtacgtcaagaccaagtatggccgcgcggctgtcagccagatcgccacgttcggtacc
cttggcgccaaggcggtcgtacgcgacgccggacgggtgctggacatgccttatatgttc
tgcgatggcctgtccaagctcattcctttcaacccggccgacccctggtcgctggagcgc
accctcaaggacgaaccggctttcaaggaacgctacgagcaggaggaagaagtccgtgcg
ctggtggacctggcgcgcccgctcgaaggtctgactcgcaatatcggcatgcatgccggc
ggcgtgctcatcgcaccgggaaagctcacggatttttgcccgctctattgccagcctggt
caggaaaacagcgcggtatcgcagttcgacaaggatgacgtcgaggctgcaggtctggtg
aagttcgactttctgggcctgcgcaacctgaccattctggattgggccgtgcgctatgtg
cgccagttcaatgccgacaaacgcgatttcgacatcatggcgttggcgttggatgacccc
gccgcctacaaggtactgtgcgacgccaacaccactgccgtgtttcagcttgaatcgcgc
ggcatgaaggagttgctcaagaagttgcggcccaacaccttcgaagacatcatcgccatg
ctggccttgtaccgtccggggccgttggagtccggcatggtggacgatttcgtcaaccgc
aagcacggtcgtgcggcggtggattattttcacccggatcttgaaggcacgctaaaaagc
acctacggcgtcatcgtctaccaagagcaggtgatgctgatctcgcagatcatcggtggc
tattcgctgggtggcgcggatctgttgcgccgtgccatgggcaagaaaaagcccgaggag
atggccaagcaccgcgagctgttccagcaaggcgctcaagaaaaaggccacgatccggac
ctggcggtcaaactgtttgacctgatggagaaattcgccggctacgggtttaacaagtcc
cattcggccgcgtatgccttgatcgcttatcagacggcttggctcaaggcttatcacccg
gccgagtttctggctgccaccttgtcctccgacatggatgacaccgacaaggtgcagatt
ttctgccgcgacgcccaggacaatggcgtcgaggtgctgccgcccgacgtcaatgcctcg
ggctatcggtttgccccggtcgaggatgaacacaccgctcatggcaggcctccacgcacc
atgcgctacggcctcggggcggtcaagggaaccggtcagggcgcggtcgaagaaattctg
cgggcgcgccaggagggcgggccttttgcgaatcttttcgatttctgccgccgtgtcagc
aagcacgccgtcaaccgccgtaccatcgaggccctgatccgggccggtgcctttgacacc
atcgaatccaatcgcgccgcgatgctggcgtcggtgggcaccgccatggaggcggccgag
caggccgctcgcagcgtcaatcaggcctcgctgtttggcgacgacagcggcgatgtcgtc
gccggcgagctggccaaggtggcgccctggaatctgcacacgcgcttgaccgaagagaag
gctgcgctggggtattacttcagcggccacctgttcgacgcctggcgtgacgaggtgcgc
cgtatcgtgcccatgccgttggcgcgtattgagccgcaacgcgacctgcaatggatgtgt
ggcgtgctcgcgggcgtgcgcgtcatgatgacccgccgcggaaaaatggtgttcgccgtg
ctcgacgacggtacggcacaggtcgagatatcggtcttcaacgagcttttcgagaaacat
cgcaatcgcctcaaagaggaccaactgctcatcgtgcagggcaaggtcagcaacgacgag
tactccggcggcatgcgcatcgtggcagaaaacctgttcgatctgcagttggcccgcgag
gcgcgcgcccgcgccctgcgcatcacgctcaacggccaggcggatgcggcacgcttgcgg
caactgctcaatcccttccgggccgagccggaaaacggcattccaggcgtgcccgtcgat
gttatctaccgcaaggataatttcctgtgcaccgtgcggttgggccaagagtggcgcgtg
cgaatggcagacaccttgctggagaatctcgccctctgggcccagcccgacggcgtggag
gtcagttactga
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