Bordetella holmesii ATCC 51541: D560_2672
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Entry
D560_2672 CDS
T03052
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bho
Bordetella holmesii ATCC 51541
Pathway
bho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D560_2672 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bho03019
]
D560_2672 (rnr)
03016 Transfer RNA biogenesis [BR:
bho03016
]
D560_2672 (rnr)
Enzymes [BR:
bho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D560_2672 (rnr)
Messenger RNA biogenesis [BR:
bho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D560_2672 (rnr)
Transfer RNA biogenesis [BR:
bho03016
]
Prokaryotic type
tRNA degradation factors
D560_2672 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Rrp44_S1
Gar1
Motif
Other DBs
NCBI-ProteinID:
AHV94101
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All DBs
Position
2499923..2502343
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AA seq
806 aa
AA seq
DB search
MPAAPPDFDPDVPSREEILNALRTAGAPLAPAELAQRMGVEREATLVGFERRLAAMERDG
QLLPNRKGVLLLATKLDFVAGRVQGHRDGFGFLVRDDGGQDIFLSPREMLKVLHGDRVLV
KPAGEYRGKPEGTIVEVIERRTNKLVGRFLHEHGLSIVAPEDQRIKHDILIPPGDTNGAQ
HGQVVSVEIIEQPTRHTQPLGKVFEVLGEIDDPGMEIEIAVRKFDVPVEFSEAARKQAAR
LPDVVRKSDLKHRVDLRDVPLITIDGEDARDFDDAVYCQPVDLGTGQRKRPGWRLLVAIA
DVSHYVKPGDAIDDDAIERGTSVYFPRRVIPMLPESLSNGLCSLNPNVDRLVLVCDMVIP
ATGAKAGTVTAYQFYNAVMHSQARTTYTSIWEALQQPGGPAAAALGKLLPDVQHLYELYQ
LLSQQRKKRGAIDFDTIETRIVCNELGRIEQIVPMVRNDAHKLIEECMLAANTCSADFMH
RSKHPGLYRIHEGPTPERLQALREFLRTQALSLGGGDTPTAKDYGEFLDTVRGRPDFPLL
QTMSLRSMQQAVYSPDNMGHFGLAYPAYSHFTSPIRRYPDLLTHRVIKALLQGQRYIPEL
QSQPLVIGRSQRDHEHAIWEKLGLLLSASERRADEASRDVEAWLKCWFVKERVGEDFSGT
VTGVASFGIFVTLDTLHVEGLVHVSELGGEYFQFNDSLHELRGERTGMRYRLTDKVQVQV
ARVDLEARRIEFRLVKGTSYESLRKQSTRNPDEPRRVKKAAAPKPAALKGQTAKQRRAEA
KKTNKVPPTPPQRPAEAAKKTPRGRR
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgctgctccgccggactttgatccggacgtcccctctcgcgaagagattctgaat
gccttgcgcacggccggcgcgcctttggcgcctgccgaactggcgcagcgcatgggtgtc
gagcgcgaggcgaccctggttggctttgagcgccggctcgccgccatggagcgcgatggc
caattgttgcctaatcgcaagggcgtgctgttgctggccaccaaattggatttcgttgcc
ggtcgcgtacagggccatcgggatggctttggctttctcgtccgcgacgacggcgggcag
gatatctttctgtcgccgcgcgaaatgctaaaagtgctgcatggtgaccgtgtcctggtc
aagccggctggcgaataccgtggcaagccggaaggtaccatcgttgaggtgatagaacgc
cgcaccaacaagttggtgggccgtttcctgcatgagcacggcctgtccatcgtcgcgccc
gaagatcagcgcatcaagcatgacattctgatccctcccggcgataccaatggagctcag
catggacaggtggtgtcggtcgagattatcgaacagccgacccgtcacacgcagccgctg
ggcaaggtgttcgaggtcctgggcgagattgatgaccctggcatggaaatcgaaattgcc
gtgcgcaagttcgacgtgccggtggagttctcggaggcggcgcgcaagcaggccgcgcgc
ctgccagacgttgttcgcaaaagcgatctcaagcaccgtgtggatctgcgcgatgtgccg
ttgatcaccatcgatggtgaggacgcgcgcgacttcgacgatgctgtctattgccagccg
gttgatctgggcacggggcagcgcaagcgtcccggttggcggctgttggtggctatcgcc
gatgtcagccactatgtgaagccgggcgatgccatcgatgatgacgccatcgagcgtggt
accagcgtatatttcccgcgccgtgtcattcccatgctgcccgagtcgctgtccaatggg
ctgtgctcgctcaatccgaacgtcgatcgcctggtgctggtctgcgatatggtgattccg
gccacgggcgcgaaggccggcacggtcaccgcttatcagttctacaacgcggtcatgcat
tcgcaggcgcgcaccacctacaccagcatctgggaggctctgcagcagccgggtgggcca
gccgcggcggcgctgggcaagctgctgccggatgttcagcacctgtacgagctctatcag
ttgctgtcgcagcagcgtaagaagcgcggcgccatcgatttcgacaccatcgaaacgcgg
attgtttgcaatgagctcggccgtatcgagcagatcgtacctatggtgcgtaacgacgct
cacaagctcatcgaagagtgcatgctggcggccaatacttgctcggccgacttcatgcat
cgcagcaagcacccgggcctttaccgaatccatgagggccccacgccggagcggctgcag
gcgttgcgtgagtttctgcgcacccaggcgctgtcgctcggcggcggcgacacccccacg
gccaaggattacggcgagtttctcgatacggtgcgtggacggcccgactttccgctgttg
cagaccatgagcctgcgctccatgcaacaagcggtctatagcccggacaatatgggccac
ttcggtctggcctatccggcgtattcccatttcacttcgcccatccggcgctatcccgat
ctgctcacgcatcgcgtcatcaaggcgctgttgcaagggcagcgatatatccccgagttg
cagtcacagccgctggttatcggacgcagccagcgcgatcacgagcatgccatttgggag
aagcttggcctgctgctgtcggccagcgaacgccgcgccgacgaggcatcgcgcgatgtg
gaggcctggctcaagtgctggttcgtcaaggagcgcgtcggcgaagacttcagcggtacg
gtcacgggcgtggcgagttttggtattttcgtgacattggataccttgcacgtcgagggt
ctggtgcatgtttctgagctgggtggagagtacttccagttcaacgactcgctgcacgag
ttgcgcggagagcgcaccggcatgcgttatcggttgacggacaaggtgcaggtgcaggtg
gcgcgggtcgaccttgaggcccgaaggatcgagtttcgcctcgtcaagggcacgagctac
gaatccttgcgcaagcaaagtacgcgtaatccggatgagccgcgccgcgtcaagaaggcc
gctgcgcccaagcctgctgcgctgaaggggcagacggccaaacagcgccgcgccgaggcc
aagaaaaccaataaagtgccgcccacgccgccgcagcggcccgccgaagccgccaagaag
accccgcgtggccgacgctag
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