Bordetella holmesii ATCC 51541: D560_3697
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Entry
D560_3697 CDS
T03052
Symbol
rumA
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bho
Bordetella holmesii ATCC 51541
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bho03009
]
D560_3697 (rumA)
Enzymes [BR:
bho01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
D560_3697 (rumA)
Ribosome biogenesis [BR:
bho03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
D560_3697 (rumA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_ANTKMT
Methyltransf_25
TRAM
Methyltransf_31
RrnaAD
Methyltransf_32
TRM5-TYW2_MTfase
MTS
Methyltransf_11
PCMT
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
AHV91459
LinkDB
All DBs
Position
complement(3447622..3449019)
Genome browser
AA seq
465 aa
AA seq
DB search
MNIESLDLEARGIARRDGKVVFVEGALPGERVIAATVRKKPSYEIARVETVLRPSAQRVE
PRCPHFGVCGGCAMQHLEPTSQVAIKQRALEDTFWHVGKLRPQRVLPPLHGPTWGYRYRA
RLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPRHVSDLLVPLHAMIGSMSRPERMPQ
IEVALGDAVTALVLRHLEPLTDHDIAILREFAREHDVQWWLQPKGPDTVHALDPAHTDAL
AYTMPEFGLRMPYRPTDFTQVNHAINRAMVSRALSLLDVQPTDRVADLFCGLGNFTLPLA
TQGREAVGVEGSKALTDRAMEAASRHGLAATTRFATLNLFEVDVSWLRGLGYFDRMLIDP
PREGAHAVAQALSLLSAAERPYRIVYVSCNPATLARDASIMVHEGGYALKAAGVINMFPH
TGHVESIAVFESLPEADVLHAQEQARLKAEEARLASQAAAEAAAA
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
ttgaatatcgagtccctggacctggaagccaggggcattgcccgccgcgatggcaaagtg
gtcttcgtggagggggcgttgcctggtgagcgcgtgattgccgccacggtgcgcaagaag
ccctcctatgaaatcgcccgtgtcgagacggtgctcagaccttcggcgcagcgggtagaa
ccgcgttgcccgcattttggtgtctgtggcggctgtgccatgcagcacctggagccaacg
tcccaggtcgccatcaagcagcgtgcactggaagatacgttctggcacgtgggcaaactg
cggccgcagcgtgtgctgccgcctttgcatgggccgacgtggggttatcgttatcgcgcc
cgcctgtcggttcgcgtcgtgcccaagaaaggcggggtgctcgtgggcttccacgaacgt
aaaagcagctacgttgccgacatgcgtgaatgccatgtgctgccacgccatgtgagcgac
ctgctggtgcccttgcacgcgatgatagggtccatgtcgcggcccgaacggatgccgcag
atagaggtggcgttgggcgacgcggttacggcgctggtgctgcgccacctcgagccgctg
accgatcacgacatcgccatcctgcgcgaattcgcccgcgagcatgatgtgcaatggtgg
ctgcaacccaaggggccggataccgtgcatgcactcgatcctgcccataccgatgcactg
gcctacaccatgccagagtttggcctgcgcatgccctatcggccgaccgacttcactcaa
gtcaaccacgccatcaatcgtgccatggtgtcgcgggcactgtccctgctcgacgtgcag
ccgaccgatcgcgtggccgatctgttctgtggcctgggcaacttcacattgccgcttgcg
acgcaagggcgcgaagcggtgggtgtcgaaggcagcaaagccctgaccgaccgcgcgatg
gaggcggcttcgcgtcatgggttggccgcgaccacccgtttcgccacactcaacttgttc
gaggtggacgtctcatggctgcgcggtttaggctattttgaccggatgctgatcgatccg
ccgcgcgaaggcgcccacgcggtggcgcaggcgctgtcgctgttgagcgccgccgagcgg
ccttaccgcatcgtgtatgtgtcctgtaacccggccacactggcgcgcgacgcgtccatc
atggtccacgaaggcggctatgcactgaaggctgccggcgtgatcaacatgtttccccac
accgggcacgttgagtccattgccgtgttcgaatcgttgcccgaggcggacgtgctgcat
gctcaggaacaggctcgtctgaaggcagaagaggccaggctggcgagccaagcggccgcc
gaggcggccgcggcttag
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