Bordetella holmesii ATCC 51541: D560_3913
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Entry
D560_3913 CDS
T03052
Name
(GenBank) putative RNA polymerase sigma factor fecI
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
bho
Bordetella holmesii ATCC 51541
Pathway
bho02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
D560_3913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bho03021
]
D560_3913
Transcription machinery [BR:
bho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D560_3913
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
PhyR_sigma-like
Sigma70_ECF
HTH_10
Rv2175c_wHTH
HTH_31
HTH_24
HTH_Tnp_ISL3
HTH_IclR
HTH_Mga
HTH_23
HTH_28
HTH_AsnC-type
Fe_dep_repress
DUF134
Motif
Other DBs
NCBI-ProteinID:
AHV91280
LinkDB
All DBs
Position
3640521..3641030
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AA seq
169 aa
AA seq
DB search
MPTAEFPAQHDLHTLYSDHHSWLFRWLRKKLGNSFDAADVTQDTFVNVITAGSMGSIREP
RAFLVTVARRLVAHRHRRQVLETSYLEILASLPQEIAPSPEAQLLALEALQELDRVLDGL
PPKAKEAFLLVHLEELSYAEVANRLGVSASSVKQYLVRANRQCLFALSA
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atgccgaccgccgagttccccgcacagcacgacctgcacacgctgtatagcgaccatcac
agttggctcttccgatggctgcgaaaaaaactgggcaacagctttgatgcggcggatgtc
acgcaagacaccttcgtcaacgtcatcacggccgggtcgatgggcagcattcgcgagcca
cgagcctttctcgtgaccgtcgcccggcggctggtggcgcaccgccaccgccgccaggtg
ctggaaaccagctatctggaaatactggcgtccctgccgcaagaaatcgccccgtcgccg
gaggcgcaactgctcgcgctcgaggcgctgcaagaactcgaccgcgtgctcgacggactg
ccaccaaaagcgaaagaagcctttttgctggtgcatctggaagagctcagctatgccgaa
gtcgccaaccgccttggggtgtcggcaagctcggtcaagcagtatctggttcgtgccaat
cggcaatgtctttttgcgctgagcgcctga
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integrated database retrieval system
