Bordetella holmesii ATCC 51541: D560_3920
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Entry
D560_3920 CDS
T03052
Name
(GenBank) DHH family protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bho
Bordetella holmesii ATCC 51541
Pathway
bho03410
Base excision repair
bho03430
Mismatch repair
bho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
D560_3920
03430 Mismatch repair
D560_3920
03440 Homologous recombination
D560_3920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bho03400
]
D560_3920
DNA repair and recombination proteins [BR:
bho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
D560_3920
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
D560_3920
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D560_3920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AHV93677
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Position
3648473..3649735
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AA seq
420 aa
AA seq
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MVTPRLTVRSANLSACQALQNAGIHPLLARLWAARGVTEAGQTQMNWPSLLPPGTLTHSE
HAAAVLADAIAAGKRLLIVADYDCDGATACAVGLRALTAMGANVDFLVPNRFETGYGLSP
AVIDLAIKHRSGKPDLIVTVDNGIASVDGVAAANDAGIGVVITDHHLPGDTLPQALAIVN
PNQPGCGFPSKNLAGVGVIFYMMLALRAELRRRGVYPPDGGPRLDALSDLVALGTVADVV
KLDANNRLLVTQGLQRMRTGRMQPGLRALFAVAGREPRSASGFDLGFALGPRINAAGRLA
DMSLGIACLTTDDEDQALRMARELDAINRERRGIEAEMRDQAMAAMQAPDAVAGATVCVF
DPSWHQGVVGLVASRLKENSGGPHWPSHRPVTTKSAARAARSWTCICAMCSIWCPSAILA
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
gtggtcacaccccgtctaactgtccgctcggccaatctgtccgcctgccaggcactacag
aatgccggcatccatcctctgctcgcccggttgtgggccgcgcgcggcgtaaccgaggcc
ggccagacacagatgaactggccctcgctgctgccgccgggcacgctgacgcactccgag
cacgccgcggcggtacttgctgacgccatcgcggcaggcaagcggcttttgatcgtggcc
gactacgactgtgacggcgccaccgcctgcgctgtcggtttgcgcgccttgaccgccatg
ggcgccaatgtggacttcctggtgcccaatcgcttcgagaccggctatggtctgtcgcct
gccgtcatcgatctggccatcaaacaccgcagcggcaaacccgacctcatcgtcacggtc
gacaacggcatcgccagcgtcgatggcgtggccgcagccaatgatgctggcatcggcgtg
gtcatcaccgatcaccatcttcccggcgatacccttccccaggccctggccatcgtcaac
cccaaccagcctggttgcggttttccctccaaaaatctggcgggcgtgggcgtcatcttt
tacatgatgctggcgttgcgcgccgagctgcgccgccgcggcgtgtacccgccagacggc
gggccgcgcctggatgcgctatccgatctcgtcgcgctgggcaccgtcgccgacgtggtc
aagctcgatgccaacaaccgtctgctggtcacgcaaggcttgcaacggatgcgcactggc
cggatgcagccagggttgcgggcgttgtttgccgtcgccggccgcgagccgcgctcggcc
agcggctttgacctgggttttgccttgggcccgcgcatcaacgccgccggccgtctggcc
gacatgagcctgggcattgcctgcctaaccaccgatgacgaagatcaggcgctgcgaatg
gcccgcgaactcgatgccatcaatcgcgagcgccgtggcatcgaggcagaaatgcgcgat
caggccatggcagccatgcaggcgcccgatgccgtggcaggcgcgaccgtttgcgttttc
gatccctcctggcatcagggcgtggtgggtctggtcgcctcgcgtctgaaagaaaattct
ggcggcccacactggccttcgcaccggccggtgacgacgaaatccgcggctcgggccgct
cgatcctggacgtgcatctgcgcgatgtgctcgatctggtgtccaagcgccatcctggcc
tga
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