Bordetella holmesii ATCC 51541: D560_3924
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Entry
D560_3924 CDS
T03052
Symbol
lysS
Name
(GenBank) lysine--tRNA ligase
KO
K04567
lysyl-tRNA synthetase, class II [EC:
6.1.1.6
]
Organism
bho
Bordetella holmesii ATCC 51541
Pathway
bho00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
D560_3924 (lysS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
bho01007
]
D560_3924 (lysS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bho03016
]
D560_3924 (lysS)
Enzymes [BR:
bho01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.6 lysine---tRNA ligase
D560_3924 (lysS)
Amino acid related enzymes [BR:
bho01007
]
Aminoacyl-tRNA synthetase
Class II (A)
D560_3924 (lysS)
Transfer RNA biogenesis [BR:
bho03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
D560_3924 (lysS)
Prokaryotic type
Other AARSs
D560_3924 (lysS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AHV94895
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All DBs
Position
3652168..3653682
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AA seq
504 aa
AA seq
DB search
MTDHSPTAQDENRLIAERRAKLAKLREAGVAYPNDFVPDAQAARLHDTYDDQDAAALLEA
TVHVKVAGRMMLKRVMGKASFATLQDGSGRIQIYLDRGTLGEDVYAGFKQWDIGDIIAIE
GSVFKTNKGELSVHASSARLLSKSLRPLPDKFHGLSDQEMRYRQRYVDLIMTDTTRRTFE
ARSKAVGGIRQAMLEAGFLEVETPMLHPIPGGAAAKPFVTHHNALDMEMYMRIAPELYLK
RLIVGGFDRVFEINRNFRNEGVSPRHNPEFTMMEFYAAYADYRWLMDFTESLIRQAAIAA
AGSAVLTYQGRELDLSKPFDRLTICEAILKYAPHYTQAELDDTDFVRAELKKFGADVDKA
PLARAGLGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTREGITERFELFITGR
EIANGFSELNDPEDQAERFRAQVEAKDAGDEEAMYYDADYIRALEYGMPPTGGCGIGIDR
LVMLLTDSPSIRDVILFPHLRRED
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcattcgcccaccgcccaggatgaaaaccgcttgatcgccgaacggcgtgcc
aagttggccaaactgcgcgaagctggtgttgcctatccgaacgatttcgtcccggacgcg
caagccgcccgcctgcacgacacgtatgacgaccaggacgccgcagccctgctcgaagcc
accgtgcacgtcaaagtggccggacgaatgatgctcaaacgcgtcatgggcaaggccagc
tttgccacacttcaagacggcagcggccgcatccagatctatctggatcgtggcacgctg
ggcgaagacgtctacgcgggcttcaaacagtgggacatcggcgacatcatcgccatcgaa
ggctcggttttcaagaccaacaagggcgagctgtccgtgcatgccagctccgcgcgcctg
ctgtccaaatcgctacgccccttgcccgacaagtttcatggcctgtctgaccaggaaatg
cgctatcgccagcgctacgtcgacctcatcatgaccgacacgacccgccgcacgttcgag
gcgcgcagcaaggccgtaggaggcatccgacaggccatgttggaggccggcttcctcgaa
gtcgaaacgcccatgctgcatcccatcccgggtggcgcggcagccaagccgttcgtgacg
catcacaacgcgctggacatggaaatgtacatgcgcattgcaccggagctctatctcaag
cgtctgatcgtcggtggcttcgatcgagtgttcgagatcaaccgcaatttccgcaacgaa
ggagtgagcccgcggcataaccccgagttcaccatgatggagttctacgcggcctatgcg
gactaccgttggctgatggacttcaccgagtcgctcatccgccaggcagccattgcagcg
gccggcagcgccgtgctcacgtaccaggggcgcgaactcgacctgtccaaacccttcgat
cgcctgacaatctgcgaagcgatcctcaagtacgcgccgcactacacgcaggccgagctc
gacgacaccgatttcgtgcgagccgaattgaagaaattcggtgccgacgtcgacaaagcc
cctctggcaagggctggtctgggcgccctgcaactggcgctgttcgaagagaccgcagag
tcccagctttggaatccgacctacatcatcgactaccccgtcgaggtatcgccactggct
cgcgcttccgacacccgtgagggcatcaccgaacgcttcgagttgttcatcaccggccgt
gaaatcgccaacggtttctccgagctcaacgaccccgaagatcaggcagaacgcttccgc
gcccaggtcgaggccaaggatgccggcgacgaagaggccatgtactacgacgcggattac
atccgggccctggaatacggcatgccgccgacaggtgggtgcggcatcggcatcgaccgc
ctggtcatgctgctgaccgacagccccagcatccgcgatgtgattctcttcccgcacctg
cgccgcgaagactga
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