Brachyspira hampsonii: BHAMNSH16_00370
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Entry
BHAMNSH16_00370 CDS
T05655
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
bhp
Brachyspira hampsonii
Pathway
bhp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BHAMNSH16_00370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhp03400
]
BHAMNSH16_00370
DNA repair and recombination proteins [BR:
bhp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BHAMNSH16_00370
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BHAMNSH16_00370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
SMC_N
UvrA_DNA-bind
AAA_16
AAA_29
nSTAND1
AAA_21
AAA_15
RsgA_GTPase
AAA_22
nSTAND3
NACHT
SLFN-g3_helicase
Viral_helicase1
APS_kinase
DnaJ_CXXCXGXG
ATPase_2
cobW
AAA_18
AAA_33
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ASJ20187
UniProt:
A0AAC9XIZ6
LinkDB
All DBs
Position
complement(96870..102686)
Genome browser
AA seq
1938 aa
AA seq
DB search
MANNSIEIRGAKEHNLKNISLSIPHKTLTTLTGVSGSGKSSLAFDTIFKEGQRRYLESLS
AYARQFLGVMAKADVEHIEGLSPTISIDQKSVNKNPRSTVGTVTEIYDFFRLLFARLGVP
YCSKCGHKISKQSEDQIAHSVLREFAEKRILVLAPIVRDRKGEYRKEIEEVKLAGYPRIR
IDNIVYKFDEDEIPELKRYEKHTLEIVIDRIKVEDKYLSRITDDIERAIRITKGLVAFYE
EHEKSEEVLETDTPENAEEDTKTKKKKIKMSKQFEIDKYYKLYTTERSCANCGHSIADIE
PNLFSFNNPMGACTVCGGLGVEHVFTEKHIIRDDNLNIYDGALSCFVDDHIGFDMEYGID
ELEVIAKTYKIDLKKPWKDLTKTEKKYLLYGTDKEIKWRKRFWYHSKLVEERVPGILDRL
KYDYETYKNSYYANFMDEVECPKCKGKRINEDALSVKFNGKTIADFSSMTIEDLYDYFTK
LKLKPNEEIIGAPIVKEIIYRLTFLVKVGLTYLTVERSSPTLSGGESQRIRLASQIGSGL
EGVLYVLDEPSIGLHQSDNKKLIESLKTLRDKNNTVIVVEHDKETMEESDFLIDIGPNAG
VNGGEVVGIGDYEEFLKSDRSYTAKYLRGDDDIEIPKTRRDGNGKFLKVIGANQFNLKNI
DVEFPLGLFIVVTGLSGSGKSTLVENILMRALHNHFYGKTLTAGSHERIEGLENIDKVIE
VDQSPIGRTPRSNPATYTKVLSPIRDLFAATKLAKMRGYDKGRFSFNVKTGRCPTCEGAG
VIELEMQFLSNVLVPCEECGGKRFNAETLDVKYRDKTIYDILEMSVSEAIKFFDGITSIT
RILKIMEDIGLGYIKLGQPSTTLSGGEAQRIKLASELHKISTGNTLYILDEPTTGLHFED
IKKLLKALDGLVDKGNTVLVVEHNLDVIKCADYIIDMGPLSGDKGGRVVAKGKPEDIIKV
KESLTAKELKEILKPSKKKKEIIKTEETKKEENTSLIIRGANKHNLKNISLTLPKNKINV
ITGVSGSGKTSLAFDTIFKEGQRRFVESLSTYARRFLGRFEDANVEKIEGLAPAIAIDQK
NVSRNPRSTVATVTEIYDYFRLIFARVSKPHCPHCNDKDTLKAETPSILATEIIDTMDLH
KLIIISPLYHSSFNHRFTFDDNDAKDIKKIIEKTREAGYVRMQINNNDYVIDDITEEEIA
SLSKEEIYSVGIVIDRIVVGKDKRARIADAIERAMDLSNGVVHIKASHGIIIKESFHTKF
PACLLHGILFDFEVTPRHFSFNSHWGYCEECKGLGSKPTFSIDLAIKDSTKPLFDGALDT
ALHNMFSTHGKHYTDSLFRLLKRNGITKKDLYQTPFNELDKKVIDTVFFGGDYAIGNVIT
AWHSNNDVTSEDYSEWKDKSLGKFFVDEECSSCHGERLNEVMRAYTIQDKNISQVCAMTV
EGAINFFDALPKLLTDRENTISKEAVKEINTRLSFLDKVGLNYLSLGRKYATLSGGEAQR
IRLASQLGSKLTGVLYVLDEPTVGLHPRDTSHLLDTLKELRDLKNTLVIVEHDRDTMKAA
DNIIDMGPFAGAFGGEVVFEGKYDDILNSNSSLTGDYLSERKKVFEKTAVRNEETECIKL
KNVSTNNLKNISVDIPLKKIVVVTGVSGSGKSSLIIDTLYPALKKRRLNQYSKFESAEIP
SIVSDTILVDQISIVGSIRSTLVSYSKVFDKIRNIFAKTPAAKAKAFAPGRFSYNGKEGR
CNICEGKGIRKIAMHFLSDMEIVCEACGGKRYNDETLSVRFKSLNIAEVLELTVDEAIEF
FDFDKSITKTLSIMSEVGLGYIKLSQRLDTFSGGELQRLKLATELAKKQGDEHIVYILDE
PTTGLHFDDVNKLLIALNKLVEKGHSIIIIEHNPDVIKAADYIIDLGLEGGTNGGEIIAK
GTVEDILQMKKGYTWKYI
NT seq
5817 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaattctatagaaataagaggagctaaagagcataaccttaaaaatatatca
ctgtcaataccgcataaaacactaaccactctgacaggagtatcaggaagcggaaaaagt
tctctggcattcgacactatttttaaagagggacagagaagatatttagaatcattatca
gcctatgcaagacagtttttaggcgttatggctaaggcggatgttgaacatatagaagga
ctatcccctactatttctatagaccaaaaaagcgttaataaaaatccccgctctactgta
ggtactgttacagagatttatgacttttttagattattattcgcaaggcttggtgttcct
tactgctctaaatgcggacataaaatttcaaagcaaagcgaagatcaaatagctcatagt
gtgttaagagagttcgcagagaaaagaattttagttctagctcctattgtaagggataga
aagggggagtatagaaaagaaattgaggaagtaaaacttgcaggatatcctagaataaga
attgataatatagtttataaattcgatgaagatgaaataccagaacttaaaagatatgag
aagcatactttagaaatagttattgataggataaaagttgaagataaatatttgtcaaga
atcactgatgatatcgagagggctataagaataacaaagggattagtagcattttatgaa
gagcatgaaaaaagtgaggaagtattagaaacagacactccagaaaatgctgaagaagat
acaaaaactaaaaagaaaaaaataaaaatgagtaagcagtttgaaatagataaatattat
aaactctatactacagaaaggtcttgtgctaattgcggacactctattgctgatattgag
cctaatttgttttcatttaataaccctatgggggcatgtactgtttgcggaggacttggg
gttgagcatgtatttacagagaagcatattataagagatgataatttaaatatttatgat
ggggctttatcatgttttgtagacgatcatatcggttttgacatggaatacggcattgat
gaactagaggttattgccaaaacttataaaatagatttaaaaaaaccttggaaagattta
actaaaacagaaaaaaaatatttactttatggtaccgataaagaaataaaatggagaaaa
agattttggtaccatagtaaacttgtagaagagagagtaccgggtattttggacagatta
aaatacgattatgaaacttataaaaatagttattatgctaattttatggacgaagttgaa
tgtcctaaatgcaagggtaaaagaataaatgaagatgcattgtcagttaaatttaatggt
aaaactatagctgatttttcttcaatgactatagaagatttatatgattattttactaaa
ttaaaattaaagcctaatgaagagataataggtgctcctatagtaaaagagattatttac
agattaacatttttagtgaaagtgggattaacatatttgacggtagagcgttcctcccct
actctttcaggcggagaatctcaaagaataaggcttgcatctcaaataggaagcggactt
gaaggtgtattatatgtattagatgagccttcaataggacttcatcagtctgataataaa
aaattaatagagtcattaaaaacattaagagataaaaataacaccgttatagttgtagag
catgacaaagaaactatggaggagtctgactttttaattgatataggtcctaatgctgga
gttaatggaggagaggttgtaggcattggagattatgaagagtttttaaagtctgataga
tcttatactgcaaaatatttacgcggcgatgatgatatagaaataccaaagacaagaaga
gatggaaacggaaaatttttaaaagtaataggtgctaatcaatttaatcttaaaaatata
gatgtagagtttcctttgggattatttattgtagttacaggactttctggaagcggcaaa
tctactttggttgaaaatattttaatgcgtgccctgcataatcatttttacggaaaaact
ttaaccgcaggcagtcatgaaagaatagaaggacttgaaaatattgataaggttatagaa
gttgatcagtcgcctataggaagaactccaagaagcaatccggcaacttatacaaaagtt
ttatctcctataagggatttatttgctgctactaaacttgcaaaaatgagaggatatgat
aaaggcagattctcatttaatgtaaaaacaggaagatgtcctacttgtgagggtgctgga
gttatagagttagagatgcagtttttatctaatgtattagtgccttgtgaggaatgcgga
ggtaaaagatttaatgcagaaactttggatgttaaatacagggataaaactatatatgat
attcttgagatgagtgtatcagaagccatcaagttttttgacggtataacttcaataaca
agaatattaaaaataatggaagatataggacttggttatataaaattgggtcagccttcc
actactttgtctggaggagaggctcaaagaataaaactagcaagcgaacttcataaaata
tctacaggaaacactttatatatattagatgaacctactacaggacttcattttgaggat
ataaaaaaattattaaaagcattagacggacttgttgataaaggaaatactgttttagtt
gtagagcataatttggatgttattaaatgtgctgattatattatagatatgggaccttta
agcggagataaaggaggaagagttgttgccaaaggaaagccagaggatattataaaagta
aaagaatcactaactgcaaaagaacttaaagaaatattaaagccttcaaaaaagaaaaaa
gaaattataaaaactgaagaaacaaaaaaagaagaaaatacttcattaataataagaggt
gccaataaacataatcttaaaaatatcagcttaacattaccaaaaaataaaattaatgtt
ataacaggagtatctggaagcggaaaaacttctcttgcatttgacactatatttaaagaa
ggtcagagaagatttgttgaatcactttctacttatgcaagaagatttttaggaagattt
gaagatgctaatgttgaaaagatagaaggacttgctcctgccatagcaatagatcaaaaa
aatgtaagcagaaatccgcgttctactgttgcaactgttacagagatttatgattatttc
agactaatttttgcaagagtgtcaaagcctcattgtcctcattgcaatgataaagatact
ctaaaagctgaaactccttcaatacttgcaactgaaattattgatactatggacttacat
aaacttattataatttctcctttatatcatagttcatttaatcatagatttacttttgat
gataatgatgcaaaagatataaaaaaaattatagaaaaaacaagagaagctggttatgtg
agaatgcagattaataataatgattatgttatagatgacattacagaagaagaaattgct
tccttatcaaaagaagagatatattctgtaggtatagttattgacagaatagttgttgga
aaggataaaagagctagaattgctgatgctattgaaagggctatggatttgtcaaacgga
gtggtgcatataaaggcttcacatggcataattataaaagaaagtttccatacgaagttt
ccagcatgtcttttgcatggtatattatttgattttgaagttacaccaagacatttttca
tttaattcgcattggggatactgtgaagagtgcaaaggacttggaagtaagcctacattc
agtatagatttggcaataaaagacagtacaaagcctttatttgacggtgcattagatact
gctcttcataatatgttttctactcatggtaagcattatacagattcattattcagatta
ttaaaaagaaatggcataacaaaaaaagatttatatcaaactccttttaatgaacttgat
aaaaaagtgatagatacagtattcttcggcggtgattatgccataggaaatgttatcact
gcttggcattctaataatgatgttacaagtgaagattattcagagtggaaagataaatcg
cttggcaaattttttgttgatgaggaatgcagttcttgtcatggcgaaaggcttaatgaa
gtaatgagagcatatacaatacaggataaaaatataagccaagtatgtgctatgacagtt
gaaggggcaattaatttctttgatgcacttcctaaacttttaacagatagagaaaataca
atatcaaaagaagcagtaaaagaaataaatacaaggcttagctttttggataaagtagga
ttaaattatttatcattaggcagaaaatacgccacactttcaggaggagaggcacagaga
ataaggcttgctagtcagttgggttctaaacttacaggagtgctttatgtattagatgag
cctactgtaggacttcaccctagagatacaagtcatttgcttgatacattaaaagaatta
agagatttaaaaaatactcttgtaatagtagagcatgacagagatactatgaaagctgca
gacaatattatagatatgggaccttttgctggtgctttcgggggagaagtagtttttgaa
ggtaaatatgatgatatattaaactcaaatagttcacttacaggagattatttaagcgag
agaaaaaaagtatttgagaaaactgctgtaagaaatgaagagactgaatgcataaaatta
aaaaatgtttctacaaacaatttaaaaaatattagtgtagatataccattaaaaaaaata
gtggttgttacaggagtatctggaagcggtaaatcatctttaataatagatacactctac
cctgctctaaaaaaacgcagactcaatcaatactcaaaatttgaaagtgctgaaatacca
agcattgtttctgacactatattagttgaccaaatatcaatagttggttctattagaagt
acattagtaagctatagtaaagtgtttgataaaattagaaatatatttgcaaaaactcct
gcagcaaaagcaaaggcattcgcacctggaagattctcatacaatggcaaagaaggaaga
tgcaatatatgtgagggtaaaggcataagaaaaatagctatgcatttcttatctgacatg
gaaatagtttgtgaggcttgcggaggtaaaagatacaatgatgaaactttatccgtaagg
ttcaaatctctaaacatagctgaagtattagaacttacagtcgatgaggcaatagagttt
tttgactttgacaaatcaatcactaaaacactttctataatgagtgaagttgggcttggt
tatataaaattatcccaaaggcttgatactttctcaggcggagagttgcagcgtttgaaa
cttgctacagaactcgcaaaaaaacaaggtgatgagcatatagtttacattttagatgaa
cctactacaggacttcattttgatgatgttaataaacttcttatagctttaaacaaattg
gtagaaaaaggacatagcatcatcataatagagcataatcctgatgttattaaagccgct
gattatataatcgatttaggattagaaggaggcactaacggcggggagataattgctaaa
ggtactgttgaagatattttacagatgaaaaaaggatacacttggaagtatatttaa
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