Brachyspira hampsonii: BHAMNSH16_04495
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Entry
BHAMNSH16_04495 CDS
T05655
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bhp
Brachyspira hampsonii
Pathway
bhp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bhp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BHAMNSH16_04495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhp03021
]
BHAMNSH16_04495
03400 DNA repair and recombination proteins [BR:
bhp03400
]
BHAMNSH16_04495
Enzymes [BR:
bhp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BHAMNSH16_04495
Transcription machinery [BR:
bhp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BHAMNSH16_04495
DNA repair and recombination proteins [BR:
bhp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BHAMNSH16_04495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ASJ20942
UniProt:
A0AAC9TUE5
LinkDB
All DBs
Position
complement(1090028..1093552)
Genome browser
AA seq
1174 aa
AA seq
DB search
MANNIQIDNKVYPERGVEFAKKYRMENGRVNFSRTASVIEPPDLLAIQKESYESFLQKDV
PENKRKNEGLQEVLTSIFPIVSSNEKMQIEFISYSIGEPKITEKEARRRDKTYSYPFKIK
VQLTVRDPERIIEQEIFVGDIPAMTDRGTFIVNGAERVIVSQIHRSPGVVFNRSDRDAMF
VAKIIPDRGTWLEFELDTKKDIMYVRIDRKKKLPVTVFLRAIGITTNEEILKLFYEVDNI
SLEKLSDENSKEALIGRRSYSTVYDTENPDEIILNPGELINPNLAERLLMSGIKEISVLN
MEAIKDNVTIINTLDKDTTKNQEEACTKIYNVIRPGEPALIENVVRTCNDLVFDPKSYAL
GDVGRYKLNKRLNFPESEQDKVLRHKDIIETIRFLIKVFINEEQLDDIDHLGNRRVRSVG
ELLSIQIKAGFTRMERIAKERMQMQDMEAVTPQSLVSIKLIQAVIKEFFGTNQLSQFMDQ
NNPLSEITHKRRLNALGQGGLTRDRAGFEVRDVHHTHYGKICPIETPEGPNIGLIVSLAT
YAKINKHGFLETPYRKVIDGKVTDEIEYLTAHDEEKYHIADANAPLNEDGTFKDNLISTR
YRSEFPYSSPDQVQYMDVSPQQIVSLSSSLIPFLEHDDANRALMGSNMQRQSVPLLYPEA
PIVGTGVEAKICQPGTGIAVHAKRAGKVIKVVHDEIVIKPTKQNSDDDLDVYELVKYQRT
NQDTNYHQRPVVNVGDVVKAGGLLADGPATDHGELALGRNVLAAFMIFEGYNFEDAILLS
KRLVQEDVFTSIHIEEFSVEARETKLDKENITRDIPNVSDAAFKNLDERGIVRIGAKVKA
GDILVGKVTPKGETEITPEYRLLHSIFGEKARDVKDTSLRVPHGKEGTVIDVRVYSRENG
DELKPGVEEVVKVFLAKKRIIQEGDKMAGRHGNKGVVARIMPIEDMPFLEDGTPVDICLN
PLGVPSRMNIGQVIEMLLGWSGHKMGLKYACPVFEGPKEEALREAFVASGMNANGKVRLY
DGRTGEPFKNEVAVGYMYMLKLNHLVEDKVHARSTGPYSLVTQQPLGGKSQFGGQRLGEM
EVWALEAYGAANMLQEFLTVKSDDMTGRARIYESIVKGDVISSPGIPESFNVLVQELRGL
GLNITIHDEEGNQLPSTEKELRQKNKKKEPKIWK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atggccaataatattcagatagataataaagtatatccggaaagaggggtagagttcgca
aaaaaatataggatggaaaacggacgtgtaaacttttcacgaaccgcttctgtaatagaa
cctcccgatctcctcgctatacaaaaagaatcttatgaaagtttccttcaaaaggatgta
cctgaaaataagagaaaaaatgagggattacaggaagttttaacttctatatttcctata
gtatcgtctaatgaaaagatgcagatagaatttatttcttattctataggagagcctaaa
atcacagaaaaagaggctagaagaagagataaaacttattcctatccttttaaaataaaa
gtacaattaactgtaagagaccctgaaagaatcatagaacaggaaatatttgtgggtgat
atacctgctatgacagacagaggtacatttattgttaatggtgctgaacgtgttatcgtt
tctcagattcatagatctccaggggtagttttcaaccgcagcgacagagatgctatgttc
gtagctaaaataattccagacagaggtacttggttggaatttgagcttgataccaaaaaa
gatataatgtatgttagaatagacagaaagaaaaaacttcctgttactgtatttttaaga
gctattggtatcacaactaatgaagaaattttgaaattattttatgaagttgataatatt
tcattagaaaaactttcagatgaaaattctaaagaggctttaataggcagaagatcatat
tcaacagtatatgatacagaaaacccagatgaaataatattgaatcctggtgagcttatt
aaccctaacttggctgaaagacttttaatgagcggcattaaagaaatatccgtattaaat
atggaagcaataaaagataatgtaaccataattaatactttagataaagatacaacaaaa
aatcaagaggaagcatgcactaaaatttataatgttataagaccgggagaacctgcttta
atagaaaatgttgtgaggacttgtaatgatttagtgtttgaccctaaatcctatgcttta
ggggatgtaggtcgttataaattaaataaaagattaaacttccctgaaagcgaacaggat
aaagttttaagacataaagatataatagaaactattcgttttttaataaaagtattcata
aatgaagaacagttagatgatattgaccatttaggaaacagacgcgtaagaagtgttggt
gaattattatccatacaaataaaagctggtttcactagaatggagcgtatagctaaagaa
agaatgcagatgcaggatatggaggcagtaactcctcagtctcttgtaagcattaaactt
atacaggctgtaattaaagagttcttcggtacaaaccaattatctcagtttatggatcag
aataatccattatcagagattacgcataaaagaagattaaatgctttaggtcagggcggt
cttacaagagacagggcaggttttgaggtaagagatgtacaccatactcactatggtaaa
atatgtcctattgaaactcctgaaggtccaaacattggacttatagtttcacttgctact
tatgctaaaattaataagcatggtttcttagagactccatacagaaaagtaattgacgga
aaagtaacagatgaaatagaatatctaacagctcatgatgaggaaaaataccatattgct
gatgctaatgcacctttaaatgaagacggaactttcaaagataatcttatatcaacaaga
tacagaagtgaattcccatattcttcaccagatcaggttcagtatatggatgtttcgcct
cagcagattgtatcactttcaagttctttgataccattcttagagcatgacgatgctaac
agggctttaatgggttcaaacatgcagcgtcaaagtgtgcctttgctttatccggaagct
cctatagtaggaacaggtgtagaagctaaaatatgtcagcctggtacaggaatagcagtt
catgcaaaaagagctggaaaagtaattaaagttgttcatgatgaaattgtaattaagcct
acaaaacaaaacagcgatgatgatttagatgtttatgaattagtaaaatatcaaagaact
aaccaagacactaattaccatcaaagacctgttgtaaatgtaggtgatgttgttaaagca
ggaggacttttagctgacggacctgcaacagatcatggtgagttagcacttggaagaaat
gttcttgctgctttcatgatttttgaagggtataactttgaggatgctattcttttaagc
aaaagattagttcaggaagatgtgtttacttccatacatatagaagagttttcagttgaa
gcccgcgaaacaaaattagataaagaaaatattactagagatatacctaatgtatcggat
gcagctttcaaaaatttagatgaaagaggtattgtaagaataggtgctaaagtaaaagca
ggcgatatattagtaggtaaagtaacaccaaaaggtgaaacagaaataactcctgaatac
agacttcttcattcaatatttggtgaaaaggcaagagatgtaaaagatacttctttaaga
gttcctcatggtaaagagggtactgttatagatgtaagagtatacagcagagaaaacggc
gatgaattaaagcctggagtagaagaagtagtaaaagtatttttagctaaaaagcgtata
atacaggaaggcgataaaatggcaggccgtcacggtaacaaaggggttgttgctagaatc
atgcctatagaggatatgccgttcttagaagacggtactcctgtagatatatgtcttaac
ccattgggtgtaccttctcgtatgaatataggtcaggtaattgagatgttactaggttgg
tctggtcataaaatgggacttaaatatgcttgtcctgtatttgaaggacctaaagaggag
gctttaagagaagcatttgttgcaagcggtatgaatgctaatggaaaagttagactctat
gacggaagaacaggagagcctttcaaaaatgaagttgctgtaggatacatgtacatgctt
aaacttaatcacttagtagaagataaagtacatgctagaagtacaggaccttactcactt
gttactcagcagcctttgggaggtaaatctcaattcggaggtcagagattaggagagatg
gaagtttgggcattggaggcttatggagctgctaatatgcttcaagagttcttaactgtt
aaatcagatgatatgacaggacgtgctagaatatatgaatccattgttaaaggtgatgtg
atatcctctccgggtataccagaaagctttaatgtattagttcaggaacttagaggtttg
ggacttaatattactattcatgatgaagaaggcaatcagcttccttctactgaaaaagag
cttagacagaaaaataaaaagaaagaaccaaagatttggaaataa
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