Brachybacterium huguangmaarense: BRM3_10805
Help
Entry
BRM3_10805 CDS
T08617
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bhq
Brachybacterium huguangmaarense
Pathway
bhq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRM3_10805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhq03019
]
BRM3_10805
03009 Ribosome biogenesis [BR:
bhq03009
]
BRM3_10805
Enzymes [BR:
bhq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BRM3_10805
Messenger RNA biogenesis [BR:
bhq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BRM3_10805
Ribosome biogenesis [BR:
bhq03009
]
Prokaryotic type
rRNA processing factors
BRM3_10805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UYG16108
LinkDB
All DBs
Position
2368545..2371688
Genome browser
AA seq
1047 aa
AA seq
DB search
MADDSRTPTDETTTASETPTAEEARPRRRRRAGAPVGAPAPAAAETEAEPHAPLTSVPEQ
ETAPVEVVEQAPARSRRRAGAPAGPPSAPVFSAAQAPAVPEAAADEDEEDEGDQDAVEAE
TSATSDTDREEGSSGVAEALASLADRRPARERSDDEAAARRERAQLDFSSLLFQAPAPRT
ADEAPEEAPEDSTESDEGSETDASDDEGGAGTARRRRRRGGRGRRGRGRGDNVGGDEGSE
SDAEETAGSSEAGAEETASSSDTSTEESASSDDESGEGASRRSRSRGSRSRKRSNAGSTE
TAEEPEGSESADGADTSDAADTDESDDADKNGGSSSRRRRRRRRSGSSGGDESPSPDDPP
NTVVKVRERRDEVKSVKGSTRLEAKKQRRREGRDAGRRRNVITEAEFLARRESVKRSMIV
RERPGRTQIAVLEDDVLVEHYVAQKTQSSMVGNVYLGKVQNVLPSMEAAFVDIGKGRNAV
LYAGEVNWDAAGLEGQPRRIELALKSGDPVLVQVTKDPIGHKGARLTSQVSLPGRYVVFV
PGGSMTGISRKLPDNERARLKKIMKQVIPEGAGVIVRTAAEGASEEELTRDVERLRAQWE
KIEKAQKSKSAPVSLSQEPDLAIKVVRDVFNEDFTSLIVEGERAYSEVHRYVSDVAPDLL
ERVTKHVGEKDSFAKHRVDEQLLKAMDRKVYLPSGGSLVIDRTEAMTVIDVNTGKFTGSG
GSLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEDNRDLVLRRLVECLGRDRT
KHQVAEVTSLGLVQMTRKRVGQGLVETFSTTCEHCNGRGVMIDIDGKHHHEAPEKDESSR
SSRRRGGNGKKGAAAKDAPDSTPEGGDAENVHRLEEDSSSRELARATIASIAAATTAHTH
PEVMVDGQVISVDQPEPPEDAEPAADDASTGPAEPAEQAEPVAEQPADPAAEASEPIVEP
AAEEQPAESDPAASPVEPSDQPVPAEADAAEQARSIEPDADEAAPSADSPVEDVPEPAVA
PLDEDATVEPATAEVADGADRAEDSPA
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgattcccgcacacccacggacgagaccacgacggcgtccgagacccccacg
gccgaggaggcccgtccccgacggcgccgccgcgccggcgcccccgtcggagcgcctgct
cctgcggccgcggagaccgaggcggagccgcacgcccctctgacgagcgtgcccgagcag
gagacggcacccgtcgaggtcgtcgagcaggcccccgcccgctcccgccgccgcgccggc
gctcccgccggcccgccgagcgccccggtcttctcggccgcccaggcgcccgccgtgccc
gaggccgccgccgacgaggacgaggaggacgagggggaccaggacgccgtcgaggccgag
acctccgcgacgtccgacaccgatcgcgaggagggctcgagcggcgtcgccgaggccctc
gcctccctcgccgaccggcgccccgcccgcgagcggtccgacgacgaggccgcggcccgt
cgtgagcgtgcccagctcgacttctcctccctgctcttccaggcccccgcgccccgcacc
gccgacgaggcgcccgaggaggcccccgaggactcgaccgagagcgacgagggctccgag
acggacgcctccgacgacgagggcggtgcgggcaccgcgcgccgtcgtcgtcgccggggc
ggccgcggtcgccgtggccgcggtcgcggcgacaacgtgggcggtgacgagggctccgag
tcggacgccgaggagaccgccggctcgagcgaggccggtgccgaggagacggcctcgtcc
tccgacacgagcaccgaggagtccgcgtcctccgacgacgagtccggcgagggcgcctcc
cgccggtcccgctcgcgcggctcccggtcgcgcaagcgctcgaacgccggctcgaccgag
accgccgaggagcccgagggctccgagtccgccgacggcgcggacacctccgacgccgcc
gacaccgacgagagcgacgacgccgacaagaacggcggctcgagctcgcggcgccgtcgt
cgtcgccgccgctccggctcctcgggcggtgacgagtcaccgtcgcccgacgacccgccc
aacaccgtcgtcaaggtccgtgagcgccgtgacgaggtcaagtccgtcaagggctcgacc
cgcctcgaggccaagaagcagcgccgccgcgaggggcgcgacgccggccgccgccgcaac
gtcatcaccgaggccgagttcctcgcacgccgcgagagcgtcaagcgctcgatgatcgtg
cgcgagcgtccgggccgcacccagatcgccgtgctcgaggacgacgtgctcgtcgagcac
tacgtcgcgcagaagacccagagctcgatggtcggcaacgtctacctgggcaaggtccag
aacgtgctgccctcgatggaggccgcgttcgtcgacatcggcaagggccgcaacgccgtg
ctgtacgcgggcgaggtcaactgggacgccgccggactcgagggccagccgcgccgcatc
gagctcgcgctcaagagcggcgaccccgtgctcgtgcaggtcaccaaggacccgatcggc
cacaagggcgcacgcctgaccagccaggtgtcgctgcccggccgctacgtcgtgttcgtg
cccgggggctccatgaccgggatctcgcgcaagctgcccgacaacgagcgggcgcgcctg
aagaagatcatgaagcaggtcatccccgagggcgcgggcgtcatcgtgcgcaccgccgcc
gagggggcgagcgaggaggagctcacgcgcgacgtcgagcgcctgcgcgcccagtgggag
aagatcgagaaggcgcagaagtccaagtcggcgcccgtctcgctctcccaggagcccgac
ctcgccatcaaggtcgtgcgcgacgtcttcaacgaggacttcacctcgctcatcgtcgag
ggcgagcgcgcctactccgaggtccaccgctacgtctccgacgtggcgcccgacctgctc
gagcgcgtcaccaagcacgtaggcgagaaggactcgttcgccaagcaccgtgtcgacgag
cagctgctcaaggcgatggaccgcaaggtgtacctgccctccggcggctcgctcgtgatc
gaccgcaccgaggccatgacggtcatcgacgtcaacacgggcaagttcaccggctccggc
ggctcgctcgaggagacggtgacccgcaacaacctcgaggcggccgaggagatcgtccgc
cagctgcggctgcgcgacatcggcggcatcatcgtcatcgacttcatcgacatggtgctc
gaggacaaccgcgacctcgtgctgcgccgcctcgtcgagtgcctcggacgcgaccgcacg
aagcaccaggtcgccgaggtcacgtcgctcggcctggtccagatgacccgcaagcgcgtg
ggccagggcctcgtcgagacgttctcgaccacgtgcgagcactgcaacggccgcggcgtc
atgatcgacatcgacggcaagcaccatcacgaggcccccgagaaggacgagtcctcgcgc
tcttcgcgccgccgcggcggcaacggcaagaagggggccgcggcgaaggacgccccggac
tccacgcccgagggcggggacgccgagaacgtgcaccgcctcgaggaggactcgagctcg
cgcgagctggcccgcgccacgatcgcgtcgatcgcggcggcgaccacggcgcacacgcat
cccgaggtcatggtcgacggccaggtcatcagcgtcgaccagcccgagccgccggaggac
gccgagccggccgccgacgacgcgtccaccggtccggccgagcctgccgagcaggcggag
cccgtcgccgagcagcccgccgatcccgcggccgaggcgagcgagcccatcgtggaaccg
gccgccgaggagcagccggccgagtccgatccggccgcgtcgcccgtcgagccctcggac
cagcccgtgccggccgaggccgacgccgcggagcaggcccgctccatcgagcccgacgcg
gacgaggcggcgccgagtgcggactcgcccgtggaggacgtgcccgagcccgccgtcgcg
ccgctggacgaggacgcgaccgtcgaaccggcgaccgcagaggtcgccgacggagccgat
cgtgccgaggactccccggcgtga
DBGET
integrated database retrieval system
