Brachybacterium huguangmaarense: BRM3_11980
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Entry
BRM3_11980 CDS
T08617
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
bhq
Brachybacterium huguangmaarense
Brite
KEGG Orthology (KO) [BR:
bhq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhq03019
]
BRM3_11980
Enzymes [BR:
bhq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BRM3_11980
Messenger RNA biogenesis [BR:
bhq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BRM3_11980
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
SH3_HelY
ResIII
Helicase_C
DEXQc_Suv3
AAA_30
MTR4-like_stalk
AAA_22
IstB_IS21
nSTAND_NTPase5
HemN_C
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UYG16319
UniProt:
A0ABY6FZE6
LinkDB
All DBs
Position
2606753..2609620
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AA seq
955 aa
AA seq
DB search
MSSPSEQYASWSAQQRLEHTELARFRARFGFDLDPFQVDACSALQDGRSVLVAAPTGAGK
TVVGEFAVHLALAAGRKVFYTAPIKALSNQKHAELSAWLGADRVGLLTGDLSLRPEADVV
VMTTEVLRNMLYAQSSTLDNLGFVVMDEVHYLADRLRGPVWEEVIIQLPDTVQLVSLSAT
VSNAEEFGAWLHEVRGTTAVIVSETRPVPLWQHVVVDGELVDLFVDRTGRPVVSHGPGAR
TERVVNPALEHLPSVRAEIGGHGGSGRSAAGPGRSGRRGTQGRHRRRGHPQRQEAPRGGR
PHGGGGALQRAPRRPDLVSLLDDEGLLPAIFFIFSRAGCDAAVRQCTMARLRLTSPEEQR
TIRAVLDERLAQIPYEDEDVLQIPAFRRAAENGYAAHHAGMLPMLKTVVEELFAAGLVKA
VFATETLALGINMPARSVVLEKLSKFNGVEHADLTPGEYTQLTGRAGRRGIDVEGHAIVV
AGPGFDADAVASLASRRTYPLRSAFRPTYNMAVNLLDRYDARTARESLEMSFAQFQADRA
VVGLARRARELDDTIEAYAGALRCDRGDIHEYAEIQAAITERERTLARERAAGDRERTRS
ALRSLRRGEVVALPGGRRQGFAVVVSVDRDTLGGPEALVLTTEGRLRTLRSADVPSPPAV
IDTLRIPAPDRLRKPKIRKDTAAALRERLAGRHDDPRESVRRPGRAPSTAARDEELRALR
ERLREHPCHDCPDLDAHLRWISRIRSVEKDRASVMRRVEGRTSSLARQFDHVCALLTELG
YLTGDDEDLHPTESGRRLRRLFSERDLLVAQCLEAGAWSTLDAPALAAMVSTVCYEARRD
GVDGAELPADPAFVHALEQTQRLGEQLAAAERRHGLEATAAPDAGIAAIMHRWALGEHYA
AAVGATGLPAGDFVRQCRQVIDLLDQLVPLPAIGPVARTAIDRVRRGFVSQEIDL
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcgccgtccgagcagtacgcgagctggagcgcgcagcagcgtctcgagcacacc
gagctcgcccggttccgggcccgcttcggcttcgacctcgaccccttccaggtggacgcg
tgcagcgccctccaggacggccgctcggtgctcgtcgcggcgcccaccggtgccggcaag
acggtcgtgggggagtttgcggtccacctggccctcgcggcagggcgcaaggtcttctac
acggcgcccatcaaggccctgtccaaccagaagcacgccgagctgtccgcctggctcggg
gccgaccgggtggggctgctcacgggcgatctctcgctgcgccccgaggcggacgtggtc
gtgatgaccaccgaggtcctgcgcaacatgctgtacgcgcagtcctcgaccctcgacaac
ctcggcttcgtggtgatggacgaggtgcactacctcgccgaccggctgcgcgggcccgtg
tgggaggaggtcatcatccagctgccggacaccgtccagctggtgtcgctctcggcgacg
gtatccaacgccgaggagttcggcgcctggctccacgaggtccgcggcacgaccgcggtg
atcgtctcggagacgcggccggtgccgctgtggcagcacgtcgtcgtcgacggcgagctc
gtggacctgttcgtcgaccgcaccgggcgtcccgtcgtgtcccacggtcccggcgcgcgc
accgagcgggtcgtgaacccggcgctcgagcacctgccctccgtgcgcgccgagatcggc
ggccacggcggatccggccgctcggccgccggccccggccggtccgggcggcgcggcacc
caggggcgtcaccgccgtcgcgggcatccccagcgtcaggaggcgccacggggcggtcgc
ccgcacggcgggggaggagcgctccagcgggcgccgcggcgccccgatctcgtctccctg
ctcgacgacgagggcctcctgcccgcgatcttcttcatcttctcgcgcgccggctgcgac
gccgccgtgcgccagtgcacgatggcccgtctgcgcctgacgagccccgaggagcagcgc
acgatccgtgccgtgctcgacgagcggctcgcccagatcccgtacgaggacgaggacgtg
ctgcagatccccgccttccgccgcgccgcggagaacggctacgccgcccaccacgcgggc
atgctgccgatgctcaagacggtcgtcgaggagctgttcgcggccggcctcgtcaaggcg
gtgttcgcgaccgagaccctcgccctcgggatcaacatgcccgcccggtccgtcgtgctc
gagaagctgtcgaagttcaacggcgtcgagcacgccgacctcacgccgggggagtacacg
cagctcacgggccgcgccgggcgtcgcggcatcgacgtcgagggccatgcgatcgtggtc
gcgggtcccggcttcgacgccgacgcggtcgcgtcgctcgcctcgcgccgcacctacccg
ctgcgctcggcgttccgccccacctacaacatggcggtcaacctcctggaccgctacgat
gcgcgcaccgcgcgcgagagcctcgagatgtccttcgcgcagttccaggccgatcgcgcc
gtggtcggcctcgcccgccgtgcccgcgagctcgacgacacgatcgaggcctacgcgggc
gctctgcgctgcgatcgcggcgacatccacgagtacgccgagatccaggccgcgatcacc
gagcgcgagaggacgctggcccgggagcgcgccgcgggggaccgcgagcgcacccgctcg
gccctgcgctcgctgcggcgcggcgaggtcgtcgccctgccaggcgggaggcgccagggc
ttcgcggtcgtggtctcggtggatcgcgacaccctgggcggccccgaggctctcgtgctg
accaccgagggccgtctgcgcacgctccgctccgccgacgtgccgagcccccctgccgtg
atcgacaccctgcgcatccccgcgcccgaccggctgcgcaagcccaagatccgcaaggac
acggcggccgcgctgcgcgagcgcctcgccgggcgccacgacgacccgcgcgagtcggtg
cgccgtcccggtcgcgccccgtcgacggcggcccgcgacgaggagctgcgcgcgctgcgg
gagcgtctgcgcgagcacccgtgccacgactgccccgacctcgacgcccacctccgctgg
atctcgcgcatccgctccgtcgagaaggaccgcgcgtccgtcatgcgacgcgtcgagggg
cgcacctcgagcctcgcgcgccagttcgaccacgtgtgcgcgctcctgaccgagctcggc
tatctcacgggcgacgacgaggacctccaccccaccgagagcgggcgccgcctgcgccgc
ctgttctccgagcgcgacctcctcgtggcccagtgcctcgaggcgggcgcctggtcgacc
ctcgacgcgcccgccctcgcggcgatggtctcgaccgtctgctacgaggcgcgacgcgac
ggcgtcgacggcgccgagctgcccgcggaccccgccttcgtccatgcgctcgagcagacc
cagcggctgggcgagcagctcgccgccgcggagcgccgccacggcctcgaggccacggcc
gcgcccgacgcgggcatcgccgcgatcatgcaccgctgggccctcggggagcactacgcg
gccgccgtcggcgccaccggcctgcccgccggcgacttcgtgcgccagtgccggcaggtc
atcgacctgctggaccagctcgtcccccttcccgccatcgggcccgtcgcccgcaccgcc
atcgaccgcgtccgccgcggcttcgtctcccaggagatcgacctgtga
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