Bacillus halotolerans: DIC78_07645
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Entry
DIC78_07645 CDS
T06619
Symbol
cshA
Name
(GenBank) ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bht
Bacillus halotolerans
Pathway
bht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DIC78_07645 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bht03019
]
DIC78_07645 (cshA)
03009 Ribosome biogenesis [BR:
bht03009
]
DIC78_07645 (cshA)
Enzymes [BR:
bht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DIC78_07645 (cshA)
Messenger RNA biogenesis [BR:
bht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DIC78_07645 (cshA)
Ribosome biogenesis [BR:
bht03009
]
Prokaryotic type
rRNA helicases
DIC78_07645 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
AZV48908
LinkDB
All DBs
Position
complement(1496803..1498338)
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AA seq
511 aa
AA seq
DB search
MVNHDITETAIRRSLNNLTITFQDFQLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDV
IGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVL
PIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFI
DDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEV
QERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVA
LRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMT
FITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTTISENNLNFYMTAA
AELLEDHDAVTVVAAAIKMATKEPDSTPVRLTDEAPMIGKRYKNQRTSKRRDGQGGGYRG
GKGKSNNRSSYDKKRSNDRRSSGDRRQKKSY
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
gtggtaaatcacgacattactgaaacagcaattagaaggagtttgaataatttgactata
acgtttcaagattttcaattaagttctgatctcatgaaggcaattaaccgtatgggattt
gaagaagcaacgccgattcaggcacaaacgattccgctcggactttcaaataaagatgtc
attggacaagcgcaaacaggtacaggtaaaacagctgcgtttggtataccccttgttgag
aaaattaaccccgagtctcctaatattcaagcaatcgtaatcgcaccaacccgtgaacta
gccattcaagtatctgaagaattatataaaatcggacaagataaacgtgcgaaagttctt
cctatttacggtgggcaggatattggacgacaaatccgggcgttaaagaaaaatccgcat
atcattgtcggaacaccgggacgtcttcttgaccacattaaccgccgcacgattcgttta
aacaatgtaaatactgttgtaatggatgaagcggatgaaatgctgaatatggggttcatc
gacgacatcgaatctattctttcaaatgtgccgagcgagcatcagacgcttctgttctca
gctacaatgccagcgccgatcaaacgcattgcagagcgtttcatgactgagcctgaacac
gtaaaagtaaaagcaaaagaaatgactgtttctaacattcagcagttctatttggaagta
caggaacgtaaaaagttcgacacactgactcgtcttcttgacattcagtctcctgagctt
gcgattgtattcggacgtacaaaacgccgtgttgatgaactggcagaagccctgaacctt
cgcggatatgcagctgaaggaattcatggtgatttaacgcaggcgaaacgtatggttgcg
cttcgcaaatttaaagaaggtgcaatcgaagtacttgttgcaactgatgttgcagctcgc
ggactcgatatctcaggtgttacacacgtgtacaacttcgacgtgcctcaagatcctgaa
agctatgttcaccgtatcggaagaacaggccgcgcaggtaaaacaggtatggcgatgacg
tttatcacaccgcgtgagaaaagcatgcttcgcgcaattgaacaaacaacgaaacgcaaa
atggaccgcatgaaagagccgacacttgatgaagcgttagaaggccagcagcaggttaca
gttgatcgtcttcgtacgacaatcagcgaaaacaacttgaacttctacatgacagcggca
gctgagctgcttgaagatcatgatgcagtgacagtggttgcagcggctatcaaaatggct
acaaaagagccggatagcacgcctgttcgcttaacggacgaagcgccgatgatcggcaaa
cgctacaaaaaccaacgcacttctaaacgcagagacggacaaggcggcggttaccggggc
ggtaaagggaaaagcaacaaccgttcttcctatgataaaaagcgttcaaacgatcgccgt
tcttcaggtgacagacgccagaaaaaatcatactaa
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