Bisgaardia hudsonensis: A6A11_00970
Help
Entry
A6A11_00970 CDS
T06663
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bhud
Bisgaardia hudsonensis
Pathway
bhud03030
DNA replication
bhud03430
Mismatch repair
bhud03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bhud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A6A11_00970
03430 Mismatch repair
A6A11_00970
03440 Homologous recombination
A6A11_00970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhud03032
]
A6A11_00970
03400 DNA repair and recombination proteins [BR:
bhud03400
]
A6A11_00970
Enzymes [BR:
bhud01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
A6A11_00970
DNA replication proteins [BR:
bhud03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
A6A11_00970
DNA repair and recombination proteins [BR:
bhud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
A6A11_00970
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
MutS_II
HROB
Motif
Other DBs
NCBI-ProteinID:
QLB12288
LinkDB
All DBs
Position
200351..203827
Genome browser
AA seq
1158 aa
AA seq
DB search
MSLPRFVHLRVHSDFSMIDGIVKIKPLIKNCVANNMVAMALTDFSNFCGLVKFYGEALSS
GIKPIIGADVLVKSDLLGDELFELTLLAKNNVGYHNITLLLSKAYERGYLDKPYIDQQWL
IEHREGIIILSGGRNGDVGKKLLKNNVEDLESAVHFYQQYFANHFYLSLSRTGRADEERY
IEQALTLAREKGIPVVATNDVCFAKPDDFEAHEIRVAIHDSYTLDDPKRPQIYSEQQYFR
SEQEMCRLFADIPSALDNTLLIAQRCNVTIRLGEYFLPQFPTGELTTEEYLIQKSKEGLE
QRLKTLFPNENERLAKRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNNIPVGPG
RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEGRDRVIDHVADM
YGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGMTLTKAFEAEPRL
PEMYNSDEEVKELIDMARKLEGVVRNAGKHAGGVVISPTLITDFSPLYCDSEGKHPVTHF
DKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARMQKEGKPLVDINTIPLDDNESFATLL
KAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIRRKHGEEEI
SYPDAEYQHISLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMA
KQRSVFKEGAINNNIEGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPAE
FMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINTGKHHFSVNHKGEIVYGIGAIKGV
GERPIRELVEIRNQSGYFKDLFDLCARVDLKKINRRTFDSLIMSGAFDKLGPHRAALAKN
LEDALKTSGQHAKDQEIGQGDMFGVLTQTPEEVEIAYANTPKWTEKQILEGERETLGLYL
SAHPINPYLKELEHYGITRLKEIVPNRRGQTTTVAGIIVNTRIAITKKGNRFGIATIDDR
SGKLDVTLFSDVLERFQDKLQKDNVVILSGQISFDDFSQGLKMSVRDLITLSEARSRYAK
SLAIGLLEQQMTPMFIKQLKNIIEPYKSGTLPVHIYYQSAKGSALLRFGIEWSVTPTDEL
LDQLMSFLGQEAVELEFK
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttaccacgttttgttcatctacgagtacacagtgatttttcaatgattgatggc
attgtaaaaattaagccattaataaaaaattgtgttgcaaataatatggtggcaatggca
ttgaccgatttttctaatttttgtggcttagttaaattttatggtgaagcattatcatca
ggtattaaaccaattatcggtgcggatgttttagtaaaaagtgatttattaggcgatgag
ttatttgaattgactttacttgcgaaaaataatgtgggttatcataatatcacgctatta
ctttccaaagcctatgaacgaggctatttagataaaccttatattgatcaacaatggtta
atagaacaccgagaaggtatcattatcttgtctggtggacgtaacggcgatgtaggtaaa
aaattacttaaaaataatgttgaagatttagaaagtgcggtccatttttatcaacaatat
tttgccaatcatttctatttatccttaagtcgtacagggcgggctgacgaagaacgttat
attgagcaagcattaacattagcaagagaaaaaggtattcctgttgttgctacaaatgat
gtatgttttgcaaaaccagatgatttcgaagctcacgaaattagggtggcgattcacgat
agttatacccttgatgatccaaaacgtccgcaaatctattctgaacaacaatatttccgt
agtgaacaagaaatgtgtcggctatttgcagatattccttctgcattagacaatacacta
ttgattgcacaacggtgtaatgtaactattcgcttaggggagtattttttaccgcaattt
ccgacaggtgagctaaccacagaagaatatttaatacaaaagtcaaaagaggggttagag
caacggctaaaaacattgtttccaaatgaaaatgaacgcttagcaaaacgtccagaatat
gatgagcgtttacaaatagagcttgatgtcattaaccaaatgggatttcccggttatttc
cttattgtgatggaatttatccaatggtcaaaagacaataatatcccagttggtccagga
cgaggttctggtgccggttctttggttgcttatgccttaaaaattaccgatttagatcca
ctcgaatttgatctgctttttgaacgctttttaaatcctgaacgggtttctatgcctgac
tttgacgttgatttttgtatggaaggacgagatcgtgttatcgaccacgttgccgatatg
tatgggcgtggtgcggtatcgcaaattattacctttggtacaatggcagcaaaagcggtt
attcgagatgtagggcgagtgcttgggcatccttatggatttgttgatcgtatttctaaa
ttaattcctcttgatcctggaatgacacttactaaagcctttgaagctgagccgagattg
cctgaaatgtataattcagatgaagaagtgaaagaattaattgatatggctcgtaagctc
gaaggtgtcgtacgtaatgcgggaaaacacgctggtggcgtggtgatatcaccgacatta
attacggatttttcaccgctatattgtgatagtgaaggtaagcaccctgttacgcacttt
gataagaatgacgtagagtatgcgggtcttgttaaatttgactttttgggattgagaacc
cttactatcataaaatgggcattagaaatgattaatgcccgtatgcaaaaagaaggtaaa
ccattagttgatattaatactattcctttagatgataatgaatcttttgctactttattg
aaagcagaaactacggctgtttttcagctcgagtcacgaggaatgaaggatcttattaag
cgtttaaaaccggactgttttgaagatattatcgcattggttgcattatttcgtcctggt
cctttgcaatctggtatggtggataattttattcgtcgtaaacacggggaagaggaaatt
tcttatcctgatgccgaatatcaacatatttccttaaagccaatccttgaaccgacttat
ggcattattctttaccaagagcaagttatgcaaattgcccaagttctcgctggctatacc
ttagggggagcggatttattacgaagagcaatgggtaagaaaaagccagaagaaatggca
aagcaacgttctgtttttaaagaaggcgcaatcaataataatattgaaggtgatcttgcg
atgaaaatctttgaccttgtagagaaatttgcaggttatggttttaacaagtctcactcg
gcagcttatgctctcgtatcttatcaaactttatggttaaaaactcatttccctgctgaa
tttatggctgctgtaatgacctctgagatggataacaccgataagatcgttggattatat
gatgaatgtttgcgtatgggactaaaagttaccccaccagatattaatactggaaaacat
catttcagcgttaatcataaaggggaaatcgtttatggtattggggcaataaaaggggtt
ggagaaagacctattagagaattagtcgaaattagaaatcaaagtggttattttaaagat
ctctttgatctttgtgctagagtagatttaaagaaaattaatcgtcgcactttcgatagt
ctgattatgtccggtgcatttgataaacttggtccacatcgagctgcgttggcaaaaaat
ttagaggatgccttaaagacatcaggtcagcacgccaaagatcaggaaattggtcaaggt
gatatgtttggtgtattaacccagactcctgaagaagtggaaattgcttatgcaaataca
ccaaaatggacagagaaacaaattcttgaaggggaaagagaaacgcttggtttatattta
agtgctcatccaattaacccatatttaaaagaattagaacactatggtattactcgttta
aaagaaattgttcctaatcgacgagggcaaactacaactgtagcagggattatcgttaat
accagaatagcaattaccaaaaaagggaatcgttttggtattgctactattgacgatcgt
tctggtaaattagatgttactttgttctctgatgtgttagagcgttttcaagataaacta
caaaaagataatgttgtcattttatcggggcaaataagttttgatgattttagtcaagga
ctaaaaatgtctgttcgtgatctcattactttatctgaagcgagaagtcgctatgcaaaa
agccttgcgatagggttattagaacaacaaatgacaccaatgtttattaaacagctaaaa
aatattattgagccttataaatcgggtacattacctgttcatatttattatcaaagcgct
aaagggagtgcattattgcgttttggtattgaatggtcagtaacaccaaccgatgagtta
ctggatcaactaatgagctttttagggcaagaagcggtcgaattagaatttaaatag
DBGET
integrated database retrieval system
