Bisgaardia hudsonensis: A6A11_01715
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Entry
A6A11_01715 CDS
T06663
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bhud
Bisgaardia hudsonensis
Pathway
bhud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6A11_01715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhud03019
]
A6A11_01715
03009 Ribosome biogenesis [BR:
bhud03009
]
A6A11_01715
Enzymes [BR:
bhud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A6A11_01715
Messenger RNA biogenesis [BR:
bhud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A6A11_01715
Ribosome biogenesis [BR:
bhud03009
]
Prokaryotic type
rRNA helicases
A6A11_01715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QLB12416
LinkDB
All DBs
Position
352561..354387
Genome browser
AA seq
608 aa
AA seq
DB search
MTETKITFNDLGLPKFILNAISDLGFESPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAF
ALPLLAQIDINKKHPQMLVMAPTRELAIQVADACEHFVKHADKGMNIVTLYGGQRYDIQL
RALRQGSQIVVGTPGRILDHIRRGTLDLSALQFIVLDEADEMLRMGFIDDVETVMAELPE
KHQTALFSATMPDPIRRITKRFMTDPQEIKIKSSGNTAPDITQSCWYVHGFRKNDALLRF
LEVEDFDAAIIFTRTKSGTLDITALLERYGFRAAALNGDMTQQAREQTLDRLRNGSLDIL
VATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRALLFVEPRERRLLGN
IERLTKKAIEEVEIPNHLALQECRRKKFVVEITKQLEHRDLEQYRSLLEDLFTADQDQED
IAAAMLMLLQGKKKLILPVDPVINKRSNRDSGDRRGDRRENPRSSERRGYGKPTAMDVYR
IEVGRMDGVEVRHIVGAIANEGDINSRNIGHIKLYDNYSTIELPQGLPKDMLKLFGKTRV
LNKQMQMSFMGESQGEARNDRGSDKRGGRGRRSDDRGSRGGNSGSGERKFKEKSNRTFNE
RSRKDGRR
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaactaaaatcacatttaatgatttaggcttgcctaaatttatccttaacgct
atttctgacctaggctttgaaagcccttcacccattcaacaagaatgtattccgcattta
ttggctgggagagatgttctaggtatggcacaaactggtagtggaaaaacggcagctttt
gcattgccactattagcacaaattgatattaataaaaaacatccacaaatgttggtaatg
gcaccaactcgagagcttgctatccaagtagccgatgcttgtgagcattttgtgaagcac
gctgataaaggtatgaatattgttactctatacggtggtcaacgttatgatattcagcta
agagcattacgacaaggttcacaaattgtagtaggaacccctggacgtattttagatcat
attcgtcgtggtacattagatttgtcagcattacaatttattgtattagatgaagctgac
gaaatgttacgtatgggctttattgatgatgtagaaacagtaatggcagagttaccagag
aaacatcaaacagcattgttttctgcaacaatgccagatcctattcgtcgtattacaaaa
cgctttatgacagacccacaagaaattaaaattaaatcaagtggtaatactgcacctgat
attactcaaagctgttggtatgttcacggttttcgtaaaaatgatgctttattgcgtttt
ttggaagttgaagattttgatgccgcgatcatttttactagaacaaaatcaggaacatta
gatattactgctttgcttgagcgttatggctttagagcagcagcacttaatggtgatatg
acccaacaagcacgtgagcaaactttagatcgtttacgtaatggtagtttagatatttta
gtcgcgactgatgttgcagctcgtggacttgatgtcgaacgcattagtttagtcgttaac
tatgatattccattagatgcagaaagttatgttcatcgtattggtcgtactggtcgagca
ggaagagctggacgtgcgttattatttgttgaaccaagagaacgccgtttattaggcaat
attgaacgcttgacgaaaaaagctattgaagaagtagagattccaaatcatctcgcttta
caagagtgtcgtcgcaaaaaatttgtagtagaaatcactaagcaattagaacatcgtgat
ttagaacaatatcgtagtttattagaagatctatttaccgcagatcaagatcaagaagat
attgcagcagcgatgttaatgttattacaaggtaagaaaaaattaattctacctgttgat
cctgttatcaataaacgttctaatcgagatagtggtgatagacgcggtgatcgtcgtgaa
aatccacgctcatcagagcgtcgaggttatggaaagcctactgctatggatgtttaccgc
attgaagtaggtagaatggatggtgttgaagtccgtcatatcgttggtgctattgctaat
gagggtgatattaatagccgtaatattggacatattaaattatatgataactattcaact
attgagttacctcaaggcttaccaaaagatatgttaaagctatttggtaaaacacgtgtt
ctaaataaacaaatgcaaatgtcgtttatgggggaatcacagggtgaagctcgtaatgat
cgtggtagcgataaacgtggtggacgaggtcgccgtagtgatgatcgtggctctcgtggt
ggaaatagtggtagtggtgaacgtaaatttaaagaaaaaagcaaccgcacttttaacgaa
cgctcaagaaaagacggtcgtagatag
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