Bisgaardia hudsonensis: A6A11_02485
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Entry
A6A11_02485 CDS
T06663
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bhud
Bisgaardia hudsonensis
Pathway
bhud03410
Base excision repair
bhud03430
Mismatch repair
bhud03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bhud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A6A11_02485
03430 Mismatch repair
A6A11_02485
03440 Homologous recombination
A6A11_02485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhud03400
]
A6A11_02485
DNA repair and recombination proteins [BR:
bhud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
A6A11_02485
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
A6A11_02485
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A6A11_02485
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
QLB12549
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Position
complement(510732..512459)
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AA seq
575 aa
AA seq
DB search
MNKIIRRRPIAESEQLSENPLLDRLYRARKIKNTQELDRTLSSLLTPDLLNGISEAVDLL
IEAQKNNTKIIIVGDFDADGATSTALMVRALRQLGLQDVSYLIPNRFEQGYGLSIDVAKM
ALKQQVELLITVDNGVSSFEGVEYLKAHNIKVLITDHHLPPETLPNADAIVNPNLPDCHF
PSKSLAGVGVAFYVMLALRAKLRELGQFDKNTQPNFLELLDLVALGTIADVVPLDKNNRI
LAHHGLERIKRNLCNCGIRALIEIANRNINELCASDLGFAIAPRLNAAGRLDNMSVGVAL
LLADNMETARALALELDGLNQTRKEIEQGMKLEALEICRNLTALQQDIPMGITLYQADWH
QGVLGILASRIKDKFHRPTIAFAQDQQAGILKGSARSIEGLHMRDVLERIHSQHPNMILK
FGGHAMAAGLSIREEYLNQFQKAFNQVIKEWLDESSLQGIIWTDGDLSNQLMTIETAELI
RRAGPWGQAFPEPIFDGEFKILQQRLVGENHLKMMLEPKQGGPLLDAIYFNIDTQYYPDL
SIKQAKIAYKLDINEYRGQRNIQLLVNYLEPLSSE
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaaataatccgacgtcgtccaatcgcagaaagcgaacaactctctgagaatcca
ttacttgatcgcctatatcgagcaagaaaaatcaaaaatactcaagaattagaccgcact
ttgtcgtcattattaacacctgatttacttaatggaatatcagaagccgttgatttatta
attgaagcacaaaaaaataatacaaaaataataattgtgggagattttgatgcagatggc
gcaacaagtactgcactaatggtcagagcgttacgccaactaggcctccaagatgtatct
taccttatccctaatcgctttgaacaaggttatggtttgagtattgatgtagctaaaatg
gcacttaaacagcaagtagaattactgattacagtagataacggtgtatcttcctttgaa
ggagtggaatatttgaaagctcacaatattaaagtacttattactgaccatcatttaccg
ccagaaaccttacctaatgccgatgcaatcgttaatcctaacttacctgattgccatttt
ccttctaaatcattagcaggtgttggcgtggcattttatgtaatgctcgcattacgcgca
aaattacgagaattaggacagtttgacaaaaatacacaaccaaatttccttgaattactg
gatcttgttgctttagggactattgctgatgttgtcccattagataaaaataatcgcatt
ttggcacaccacggcttagagagaattaagcgaaatttatgtaattgtgggattcgtgct
ttaattgaaatagccaatcgaaatattaatgaactttgtgcctctgatcttggctttgct
atcgctcctcgcctgaatgcggcaggacgtttagataatatgtctgtgggcgtagcctta
ttacttgccgataatatggaaacggcgagagcattagcattggaattagatggcttaaat
caaacgcgtaaagaaatagaacaagggatgaaacttgaggcattagaaatttgccgaaat
cttaccgcacttcaacaagatataccaatgggaattacattatatcaagcggattggcac
caaggtgtattagggattttagcgtcacgtattaaagataaatttcatcgtccaacaatc
gcttttgctcaagatcaacaagctggaattttaaaaggttctgcccgatcgattgaggga
ttacatatgcgagatgtattagaaagaattcattctcaacacccaaatatgatcttaaag
tttgggggacacgcaatggctgctggactgagcattcgagaagaatatcttaatcaattt
caaaaagcatttaatcaagttatcaaagaatggcttgatgaaagctcactacaaggaatt
atttggacagatggcgacctttcaaatcagttaatgaccatagaaacagcggagctaatt
cgccgagcgggaccttggggacaagcctttcctgaacctatttttgatggagaatttaaa
attttacaacaacgtttggtaggcgaaaatcatctcaaaatgatgttagaacctaaacaa
ggcggaccacttttagatgcaatttattttaatattgatacccaatattaccccgatcta
tcaataaaacaggccaaaattgcctataaattggatatcaacgagtatcgtggacaacga
aatatccagttattagttaattatttagaaccgctttcgagtgaataa
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