Bisgaardia hudsonensis: A6A11_05015
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Entry
A6A11_05015 CDS
T06663
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
bhud
Bisgaardia hudsonensis
Pathway
bhud03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A6A11_05015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhud03400
]
A6A11_05015
DNA repair and recombination proteins [BR:
bhud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A6A11_05015
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A6A11_05015
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
UB2H
AAA_30
AAA_22
DUF87
HEM4
HH_RND_rel
Motif
Other DBs
NCBI-ProteinID:
QLB13012
LinkDB
All DBs
Position
1074667..1076700
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AA seq
677 aa
AA seq
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MNKINKKPFILHSDFQPSGDQPEAIKKLVTNLNDGLAHQTLLGVTGSGKTFTIANVIAKL
NRPAMLLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASIN
DQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYLKMMLHLQSGAIISQRQILAKL
AELQYTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGTSFG
AVPRYTIYPKTHYATPREKVLDAIEKIKVELADRRQFLLENNKLVEEQRITQRTQFDIEM
MNELGYCSGVENYSRYLSGRNEGEPPPTLFDYIPSDGLLIIDESHVTVPQIGGMYRGDRS
RKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGNYELEKSGSEIIDQVVRPT
GLLDPEIEIRPVATQVDDLLSEVRQRADQNERVLVTTLTKRMAEDLTDYLEDHGARVRYL
HSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI
QTIGRAARNLRGKAILYADRITNSMEKAISETSRRREKQIKYNEDRGLVPQALNKKVGEL
LDIGQGANYKSKSKQRISKIEEDNGSYAIPKNPKEYQLQVKKLETQMYKYAQDLEFEKAA
AIRDQLQELRETFMLEV
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaataaataaaaaaccttttattttacactctgattttcaaccatcaggggat
cagccagaagcaattaaaaaattagtaacaaatctcaatgatggattagcccatcaaact
ttacttggtgtaacaggatcaggtaagacctttactattgctaatgttattgcaaaatta
aatcgcccagcgatgttgcttgctccaaataaaacgttagccgcacaactttatgctgaa
atgaaagcgttttttcctgaaaacgcagtagagtattttgtctcctattatgattattat
caaccagaagcttatgtaccaagtagtgatacttttattgaaaaagatgcttctattaat
gatcaaatagaacaaatgcgtttatccgcaaccaaatcttttttggaacgtagagatact
attgtggttgcgtctgtttcggcaatttatggtctaggtgatcctgatagttatttgaaa
atgatgctacatttgcaatcaggggcgattattagtcagcgacaaattttggcaaaatta
gcggagttacaatatacacgtaatgatcaagcatttcagcgaggtacatttagagttcgt
ggtgaaattattgacatttttcccgctgaatcagatgatcgtgccgttagaatagaactt
tttgatgatgaaatagaacgtttgagtttgtttgatcctttaactggtacgagttttggt
gctgtacctcgttatacgatttacccaaagactcattatgcaacaccgagagagaaagta
ttagatgcgattgagaaaattaaagttgagttagctgatcgtcgtcaattcttattagaa
aataataaacttgttgaagagcaacgtatcacacaacgcactcaatttgatattgaaatg
atgaatgagttaggttattgctctggagtagagaattactctcgttatttatcaggacgt
aatgaaggcgaaccaccaccaaccttatttgattatattccttctgacggattattaatt
attgatgaatctcacgttactgttccacaaattgggggaatgtatcgaggagatcgttct
cgtaaagaaactctagttgaatatggttttcgcttgccctctgctttggataaccgtcca
ttgcgttttgaggagtttgaacgattagcaccacaaactatttatgtgtcagctacacca
ggtaattatgaactagaaaaatcgggtagtgagataattgatcaagttgttcgtccaaca
ggattacttgatcctgaaattgaaattcgtcctgtggcaactcaagttgatgatttatta
tcagaagttagacaaagagcggatcaaaatgaacgagttttagtgactactttaacgaaa
cgaatggctgaagatttaactgattatttagaagatcatggggcaagagtacgttatttg
cattctgatattgatacggttgaacgagttgaaattattcgtgatttacgtttaggggaa
ttcgatgttttggttggtattaacttattgagagaaggcttagatattcctgaggtttct
ttagtcgctattttagatgcggataaggaaggtttcttacgctctgaacgttcattaatt
caaacgattgggcgagcagcacgtaatctacggggaaaagcaattttatatgcagatcga
atcacgaattcaatggaaaaggctatttctgaaacaagccgccgtcgagaaaagcagatc
aagtataatgaagatcgtggattagttcctcaagcattaaataaaaaagttggcgaatta
ctagatattggtcagggagctaattataaatcaaaatcaaaacaacggatttcaaaaatt
gaagaagataatggtagttatgcaataccaaaaaatccaaaagaatatcaactacaagtt
aaaaaattagaaactcaaatgtataaatatgctcaagatcttgaatttgaaaaagccgca
gccataagagatcaattacaagaattgcgagaaacatttatgttagaagtgtaa
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