Bisgaardia hudsonensis: A6A11_05275
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Entry
A6A11_05275 CDS
T06663
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
bhud
Bisgaardia hudsonensis
Pathway
bhud03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
A6A11_05275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhud03400
]
A6A11_05275
Enzymes [BR:
bhud01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
A6A11_05275
DNA repair and recombination proteins [BR:
bhud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
A6A11_05275
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
A6A11_05275
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A6A11_05275
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
E_motif
Motif
Other DBs
NCBI-ProteinID:
QLB13063
LinkDB
All DBs
Position
1136461..1137882
Genome browser
AA seq
473 aa
AA seq
DB search
MNNNFSFFIYDYESFGVNPAEDRPAQFAGIRTDKDFNIIGEPVMFYCKQTNDYLPSPEAV
LVTGITPQECNEKGIAEPEFAAKILDEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPY
EYSWKNGNSRWDLLDLVRACYALRPEGINWAFDEDGMPSFRLEKLTKANGIEHSNAHDAM
ADVYATIAMAKLIKEKQPKLFQFFFENRGKKEIEAMIDTATMTPLVHVSGMLGNYRGNTT
WIVPLAWHPINKNAVIVCDLAGNIDDLLTKSAVELQQNLYTKKTELEEQGKLAVPLKLVH
INKCPIIAPAKTLLPETADRLGIDRNHCLENLKKLKNSMDIREKVLNIFTDDRSFEPSEN
VETELYSGFFNYNDKNNMAILRDLPPEKLAEHNLSFQDKRIPDLLFHYRARHFYKTLSRA
EQIKWQKYRQNKLAKSAVKFEEDLQRLVELNSDNPDNLNLLQKVYEYGVKLIS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaataataattttagtttttttatctatgattatgaaagttttggggtaaacccagca
gaagatagacccgcacagtttgcgggtattcgtactgataaagattttaatattattggt
gagccagtaatgttttattgtaaacaaaccaatgattatttaccttcacctgaagcagtt
ttggttacaggaattacaccacaagaatgtaatgaaaaggggattgctgagccagaattt
gctgcaaaaattcttgatgagtttagtcaaccaaacacttgtgtaatgggatttaataac
attcgttatgatgatgaaatgactcgctatacattttatcgtaactttattgatccctat
gaatatagctggaagaatggtaattcacgttgggatttacttgatcttgttcgtgcttgt
tacgcattacgtcctgaaggtataaattgggcatttgatgaagatggaatgccatctttt
cgtctagaaaaactcacaaaagccaatggaatagagcacagcaatgctcatgatgcaatg
gctgatgtttatgctacgattgcaatggcaaaattaataaaagaaaaacaacctaagctt
tttcaatttttctttgaaaatcgtggcaaaaaagaaattgaagcaatgattgatactgca
acgatgacaccattagtacatgtatcaggaatgctaggtaattatcgtggtaacactact
tggattgtacctttagcctggcatccaataaataaaaatgcggtaattgtttgtgatctt
gctggaaatattgatgatttactcacaaaaagtgcggtcgaattacaacaaaatttatac
acaaaaaaaactgaactagaagaacaaggaaaattagctgttcccttaaaattagttcat
attaataagtgtccaattattgcaccagcaaagaccttattacctgaaacagcagatcgt
ttaggtatagatagaaatcactgtttagaaaatctgaaaaaattaaaaaactctatggat
attagggaaaaagtactcaatatctttactgatgatcgttcatttgaacctagtgaaaac
gtagaaactgaattatatagtggattttttaattataacgataaaaataatatggcaatt
ttaagggatttaccacctgaaaaactagcagagcataatctatcttttcaagataaacgt
attcctgatttattatttcattatcgggcaaggcatttctataaaaccttatcaagagct
gaacaaattaaatggcaaaaatatcgccaaaataaactggctaaaagtgcggttaaattt
gaagaagatttacagcgacttgttgagttaaattcagataaccctgataaccttaattta
ttacaaaaagtttatgaatatggtgttaaattgataagctaa
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