Bisgaardia hudsonensis: A6A11_09315
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Entry
A6A11_09315 CDS
T06663
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bhud
Bisgaardia hudsonensis
Pathway
bhud03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bhud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A6A11_09315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhud03400
]
A6A11_09315
Enzymes [BR:
bhud01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
A6A11_09315
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
A6A11_09315
DNA repair and recombination proteins [BR:
bhud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
A6A11_09315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
DZR
Zn_ribbon_6
C1_2
Zn_ribbon_IS1595
NFACT_N
RNHCP
Motif
Other DBs
NCBI-ProteinID:
QLB13791
LinkDB
All DBs
Position
complement(2038488..2039300)
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AA seq
270 aa
AA seq
DB search
MPELPEVETSVRGISPYLNGFIIERIIVRNNKLRWDVSPELTQLNDVKIINLARRAKYII
IHTEKGYIIGHLGMSGSVRIVPHHSPIDKHDHIDIIMNNGKLLRYNDPRRFGAWLWTESL
EDFHLFSKLGPEPLSEEFNTDYLWKKSRQRNIPIKRFLMENSVVVGVGNIYANETLFLCN
IHPNKLASTLTKKQCQLLVNEIKNVLSIAIQKGGTTLKDFLQPDGRPGYFAQELLVYGNK
EKPCSKCGTKIKSLVIGQRNSYFCPKCQKM
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaagttgaaacctcagtccgaggtattagcccttatcttaatggt
tttattatcgaacgtattattgtgcgtaataacaaattacgttgggatgtcagtcccgaa
ttaactcagttaaacgatgttaaaattattaatctggctcgccgagcaaaatatatcatt
attcatacagaaaaaggctatattattggacatttaggtatgtcaggttcagttagaatc
gttccccatcatagcccaatagataagcatgatcatattgatatcattatgaataatgga
aaattattacgttataacgatcctaggcgttttggcgcctggttgtggacagaaagcctt
gaggatttccatctattttcaaaattaggtccagagccattatctgaagagtttaatacc
gattatttatggaaaaagagccgtcaacgtaatattcccataaagcgttttttaatggaa
aattccgtagtggttggtgtggggaatatttatgccaatgaaaccttatttctttgcaat
attcaccccaataaattagcgagtaccttaactaaaaaacagtgccaattactggttaat
gaaattaaaaatgttttgagtatcgccattcagaaaggggggacaacattaaaagatttt
ttacaaccagatggacgtccaggttattttgcccaagaattattagtctatggtaataaa
gagaaaccttgctcaaagtgcggtacaaaaattaaaagtttagttatcggacaacgcaac
agttatttttgccctaagtgtcagaagatgtaa
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