Brevibacillus humidisoli: LOK74_18115
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Entry
LOK74_18115 CDS
T08900
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bhui
Brevibacillus humidisoli
Pathway
bhui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOK74_18115 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhui03019
]
LOK74_18115 (rnr)
03016 Transfer RNA biogenesis [BR:
bhui03016
]
LOK74_18115 (rnr)
Enzymes [BR:
bhui01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LOK74_18115 (rnr)
Messenger RNA biogenesis [BR:
bhui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LOK74_18115 (rnr)
Transfer RNA biogenesis [BR:
bhui03016
]
Prokaryotic type
tRNA degradation factors
LOK74_18115 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
CSD
S1_RRP5
RNase_II_C_S1
OB_RNR_1st
OB_Dis3
TFA2_Winged_2
S1CSD-TOTE-2
TFIIE_beta
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
UFJ39944
LinkDB
All DBs
Position
complement(3704735..3707221)
Genome browser
AA seq
828 aa
AA seq
DB search
MMNEQEILSFMREQAYHPMTIDELEEAFQITNADDFKELVKTLNQLEDQGEIVRTRTNRY
GVPEKMNLFKGRLQSHTKGFGFVIPETPGEGDLYIHANDMNGAMHGDIVLARVEKQTGGA
RKEGRIIRVVERGITEVVGTFQDEAHYGFVIPDDRRLGKDLFIPKGAYNGAVDGHKVVAK
ITRYPDGRSNPEGEVTEILGHKNDPGVDILSIIRKYGLPEAFPQEVLAEAEAVPDEISEE
EIRGRRDLRDRMMVTIDGADAKDLDDAVSLEQLPNGNYLLGVHIADVSYYVKENSALDQE
AYRRGTSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTITCDMEFDQNANVVKHDIYLSVI
RTNERMTYADVRSILVDRDEALIEKYHDLVPMFERMEELCRKLRQKRMSRGAIDFDFREA
KIYVNEQGEPTEIGFRTRSIAEQIIEEFMLAANETVAEHFHWMKKPFIYRVHEDPNQEKL
QSFIEFVTTFGYAVRGKGNSIHPRALQQLLEEAKDTPEEVIISTVLLRSMKQARYDAESL
GHFGLATDFYTHFTSPIRRYPDLIVHRLIREWVERGVMNEQREAYWAEKLPLIAEHTSQR
ERVAVDAERETDDLKKTEYMAEHIGEEFEGVISSVTSFGIFVELPNTIEGLVHVSFLTDD
YYHFHEKAYALVGERTGKQFRIGDVVQVRVANVNIEERTIDFEIVGMKKSASRRGERMPR
AIAGGKVDRGGKAERAGKRGKAARGKGKADKAPKTAKTAAETPAAKRKRLKERARKRLEG
VAVEFGDDYLGQEQSTGAAGQKAFWEDLVESKKKRKKRVAKAAKRKRR
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacgaacaagaaattctttcgtttatgcgggagcaggcgtatcacccgatgacg
attgatgagttagaggaagcatttcaaatcacaaatgcagacgatttcaaagaattggta
aaaaccttaaaccagctggaagatcagggcgagatcgtgcgaacacggaccaaccgctac
ggtgttccggaaaagatgaatctgttcaagggcagactacagagccacaccaagggattc
ggctttgtcatccccgaaacaccgggtgaaggcgatctctacattcacgccaacgacatg
aacggggcgatgcatggcgacatcgtgctggcccgcgtggaaaagcagacgggtggcgcc
aggaaagagggacggatcatccgtgtcgtggagcgggggatcacggaagtagtcgggacc
tttcaggatgaggctcattatggctttgtcatcccggacgaccgcaggctggggaaagat
ctgtttatcccgaaaggggcgtataatggagcggtagacggccacaaggtagtagccaaa
atcacccgttacccggacggacgttccaatccagagggggaagtgacggagatcctgggg
cataaaaatgatcccggtgtcgacatattgtccatcatccgcaagtacggactgccggaa
gcgtttccccaggaggtgctggcggaagcagaggccgtaccggatgagatctcggaagag
gaaatccgcggacggcgcgacctgcgggaccggatgatggtgaccatcgacggtgccgac
gccaaggatttggacgatgccgtctctctggagcagctgccaaatggaaactatctgctc
ggtgtccacatcgcggatgtcagctactacgtaaaggaaaactcagccctggatcaggaa
gcgtatcggcgcggcaccagtgtctatctggtcgaccgggtcatcccgatgctgccccac
cgcctgtccaacgggatctgcagcctcaatccgcaggtggatcgcctcaccatcacctgt
gacatggagttcgaccagaatgccaacgtcgtaaagcacgatatctacctcagcgtcatc
cgcaccaacgaacgcatgacgtacgccgacgtgcgcagtattctggtcgaccgggatgaa
gcgctgatcgaaaaatatcacgatctggttccgatgtttgaacggatggaagaactgtgc
cgcaagctgcggcagaaacggatgagccgcggcgcgattgactttgatttccgtgaggca
aaaatctacgtcaatgagcagggagaaccgaccgagatcggatttcgcactcgctcaatt
gccgaacagatcatcgaggaatttatgctggcggccaacgagacggttgccgaacacttt
cattggatgaaaaagccgtttatttaccgggtccacgaagatcccaaccaggaaaaatta
cagtcctttatcgaatttgtgaccacgtttggctacgcggtgcgcggaaaagggaacagc
atccatccacgcgcattgcagcagctgttggaagaagcgaaggatacaccggaggaagtg
atcatcagtaccgtcctgctgcgttcgatgaagcaggcgcgatacgacgcggaaagcctc
ggtcactttggtttggctacagatttttacacacacttcacatcccctattcgccgctat
ccagacctgatcgtacaccggctgatccgagagtgggtagaacgcggtgtgatgaacgag
cagcgggaagcctactgggcggaaaaactgccgctgatcgccgagcatacctcacagcgg
gagcgggtagccgtcgatgctgagcgggaaacggatgatctgaagaaaaccgagtacatg
gcggaacatatcggcgaggagtttgaaggtgtcatctccagcgtcacctcatttgggatc
ttcgtcgagctgcccaatacgatcgaaggcttggttcacgtcagcttcctgaccgacgat
tactaccacttccacgaaaaggcgtatgcgctcgtaggtgagcgtaccgggaagcagttc
cgcatcggggatgttgtccaggtgcgcgtggccaatgtgaatatcgaagagcggacgatc
gattttgagatcgtcgggatgaaaaaaagtgcctctcggcgcggcgagcgcatgccgcgc
gcgattgccgggggtaaggtggatcgcggcggaaaagcagaacgtgccggcaagcggggg
aaagcggcacgcggcaagggcaaagcggacaaggcgcccaagacggccaaaacagcggct
gaaacgccggcagccaagcggaagcggttgaaagaacgggctcgcaagcggctggagggc
gtcgctgtggagtttggcgatgattacctggggcaggagcagtcgacaggtgcggctggt
caaaaagcgttctgggaggacctggtcgagtccaagaagaagcggaaaaagcgggtggct
aaggctgcgaagcggaagcggagatag
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