Brevibacillus humidisoli: LOK74_23465
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Entry
LOK74_23465 CDS
T08900
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bhui
Brevibacillus humidisoli
Pathway
bhui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOK74_23465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhui03019
]
LOK74_23465
Messenger RNA biogenesis [BR:
bhui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LOK74_23465
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UFJ43425
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Position
4810025..4811620
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AA seq
531 aa
AA seq
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MYCIEYLDEIVVIDCGVKFPENEMFGVDLVIPDVSYLVDNQDKIKGLFLTHGHEDHIGAI
PYVLKQINMPVYGGRLTLGLVKSKLEEHRMLSDVELVTVTDETVVPFRHLSVSFFRTNHS
IPDSFGIAVETPEGTVVHTGDFKLDMTPVGPSTDFAKMAKIGNGDVLALLSDSTNSERPG
FTMSERAVGEGIQEVIAKARGRIILATFASNVHRLQQVVEAAMSVDRKIAVIGRSMEKVF
LIGQELGYIQVPEGMLIDIKTIDQYPDNQILIICTGSQGEPMAALTRIASGAHRTVQIYP
EDTVIISASPIPGNTINVSRTIDKLFRAGANVVHGTVFDIHASGHGSSEELKMMLNFIRP
RYFVPIHGEYRMLVTHSKLAQQVGIDPENIFVMDNGDVLSCTREQATRGKVPAGVVLIDG
SGIGDVGNIVLRDRKHLAEDGLMVVVVSIDMKNFKILTGPDIVSRGFVYVRGSEALIQEA
TVLVKQRLAELLNKKVKEWSELKSQINQVLKPYVFEKTGRNPMILTILMEV
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgtactgcatcgaatatctggatgagatcgtggtgatcgactgcggcgtcaagtttccg
gaaaatgagatgttcggtgtcgatctggtgatccccgacgtttcctacctggtggacaat
caagataaaatcaagggattgtttctcactcacggacatgaggaccacatcggggctatt
ccttatgtgttgaagcagatcaacatgccggtctatggcggccgactgacgctgggactg
gtcaagtcgaagctggaggagcatcggatgctcagcgacgtcgagctggttaccgtcacg
gatgagacagtcgtgcccttccgtcatctgtccgtctcgttcttccggaccaatcacagt
atccccgactcgtttgggatcgcggtagagacaccggaaggtacggtggtgcacaccggt
gacttcaagctggatatgacgccggttggcccttcgaccgattttgccaaaatggccaag
atcggcaacggcgatgtgctggccttgttgtcagacagcaccaatagcgaacggccgggc
tttacgatgtcggagcgggctgtaggcgagggcatacaggaagtgatcgccaaggcgaga
gggcggatcatcctcgccacatttgcctccaatgtgcatcggttgcagcaggtagtagaa
gccgcgatgagcgtggaccgcaagattgcggtgattggccgcagtatggaaaaggtgttc
ctgatcggccaggaactgggctatatccaggtgccggaaggaatgttgatcgacatcaag
acgatcgaccagtacccggacaaccagatcttgattatctgtacgggcagccagggggaa
ccgatggctgcactgacccgcatcgcttctggcgcgcaccgcaccgtgcagatctatccg
gaagacaccgtgattatctccgcctcaccgattcccggcaacacgatcaacgtcagccgg
acgattgacaagctgttccgggcgggagccaatgtggtccacggtaccgtgtttgacatc
cacgcttccggtcacggcagcagcgaagagttgaagatgatgctcaactttattcgccca
cgctactttgttccgatccacggcgagtaccggatgctggtaacccactccaaactggcc
cagcaggtggggatcgatcccgagaatatcttcgtgatggataacggcgatgtgctctcc
tgtacacgtgagcaggcgacacggggcaaagtgccggctggggttgtcttgatcgacggc
agcggtattggcgatgttggcaatatcgtgctgcgcgatagaaagcatctggcggaagac
ggattgatggtagtcgtggtcagtatcgacatgaaaaacttcaagatcctgaccggtcct
gacatcgtcagccgcggattcgtctacgtccgcggatcggaagcactgatccaggaggcg
accgtactggtcaagcagagactggccgaactgctcaacaagaaggtgaaagagtggtcc
gagttgaagtctcagattaatcaggtgctgaaaccatatgtgtttgaaaagacgggccgc
aacccgatgatcctgacgatcttgatggaagtataa
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