Bacteroides humanifaecis: JXR92_001155
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Entry
JXR92_001155 CDS
T08258
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bhum
Bacteroides humanifaecis
Pathway
bhum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JXR92_001155 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhum03019
]
JXR92_001155 (recQ)
03400 DNA repair and recombination proteins [BR:
bhum03400
]
JXR92_001155 (recQ)
Enzymes [BR:
bhum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JXR92_001155 (recQ)
Messenger RNA biogenesis [BR:
bhum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JXR92_001155 (recQ)
DNA repair and recombination proteins [BR:
bhum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JXR92_001155 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HHH
HTH_40
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
UDB44305
LinkDB
All DBs
Position
complement(284048..286231)
Genome browser
AA seq
727 aa
AA seq
DB search
MAGKKINLTDQLKKYFGFDTFKGNQEAIIENLLAGNDTFVLMPTGGGKSLCYQLPSLLME
GTGIVISPLIALMKNQVDAMRNFSEEDGIAHFINSSLNKSAIDQVRSDILSGKTKLLYVA
PESLTKEENVEFLKTVKISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA
TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRPKTANVDRDIIKFIKNNPEKSGII
YCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMGID
KPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLEKFMQGKPVAEQE
IGKQLLLETAAYAESSVCRRKALLHYFGEEYMEENCGNCDNCLNPKKQVEAQELLCTVIE
AVLAVKENFKADYIIDIIQGKETSEVQAHLHEDLEVFGSGMGEEDKTWNAVIRQALIAGY
LSKDVENYGLLKVTDDGRKFLKHPKSFKIVEDNDFEDVEEEAPARGGGACAVDPALYSML
KDLRKKLSKKLEVPPYVIFQDPSLEAMATIYPVTLDELQNIPGVGAGKAKRYGEEFCKLI
KRHCEENEIERPEDLRVRTVANKSKMKVAIIQAIDRKVALDDIAMSKGIEFEELLDEIEA
IVYSGTKLNIDYFLEDIMDEDHLLDIYDYFKESTTDKIDDALDELGDDFTEEEVRLVRIK
FISEMAN
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggcagggaagaagattaatttgacagaccagctgaagaaatacttcgggttcgataca
tttaaaggaaatcaggaagcaatcatagagaatctgttggcgggtaatgatacattcgtg
ttgatgcctaccggtggtggaaaatctttgtgctaccaactgccgtccttgttgatggag
ggcacgggtatcgtgatttctcctctgattgccttgatgaagaatcaggtcgatgcgatg
cgtaacttcagcgaagaggatgggatagcccacttcatcaattcttccctaaacaagagt
gcgatagaccaggttcggtctgacatactcagtggtaagacaaagctgttgtatgtggct
ccggaatcactgacgaaggaagagaatgtggagtttctgaaaacggtgaagatttcgttc
tatgccgtggacgaagcccattgtatctctgaatggggccatgacttccgtcctgagtat
cgccgtatccgtcccattatcaatgaaataggaaaagcccctctgatagcgttgactgcg
acggccacaccgaaagtgcaacatgacatccagaagaatctgggtatggtggatgcgcag
gtgttcaagtcatcgttcaaccgcccgaatctttattatgaggtacgtcccaagactgca
aatgtagaccgggacatcatcaagttcattaagaacaatcccgaaaagtcaggcattatc
tattgcctgagtcggaagaaagtggaggaacttgctgaaatcctgcaggcaaacggaatc
aatgcccgtgcctatcatgctggaatggattcggctacacgaacacagaaccaggatgat
ttcctgatggaaaaaattgatgtgattgtagctaccattgcttttggtatggggattgac
aaaccggatgtgcgctatgtcatccattatgatatacccaaaagtctggaaggatattat
caggagaccggacgtgccggaagagatggaggagaagggcagtgtattactttctatacc
aataaagacttgcagaagctcgagaagtttatgcaaggcaaacctgtagcagagcaggaa
attggcaagcagcttctgctggagactgctgcgtatgccgaatcttccgtatgccgccga
aaggcgttgcttcattacttcggcgaagaatatatggaagaaaattgtggtaattgtgac
aactgtttaaatccgaaaaaacaagtggaagctcaagaattattgtgtaccgtgattgaa
gctgttctcgcggtgaaagaaaattttaaagcggactatattatagacataatacaaggt
aaggaaacttcagaagtgcaggcgcatctgcacgaagatctcgaagtattcggctctggc
atgggcgaagaagacaaaacgtggaatgctgtgatccgtcaggcgcttattgccggctat
ctgagtaaggatgtcgaaaactatggcttgctgaaagtgacggatgacggtaggaagttc
cttaaacatcctaaatcattcaagatagtggaagacaatgactttgaggatgtggaagaa
gaagcacctgcacgtggaggcggtgcgtgtgcggtagacccggcattgtactccatgttg
aaggacttacgaaagaagttgtccaagaagttggaagtgcctccttatgttattttccag
gatccgtctttggaagcaatggcgaccatatatccggtgactttggacgagttgcagaac
ataccgggtgtaggagccggaaaggcaaaacgctacggcgaggaattctgcaaactcatt
aagcgtcactgtgaagagaatgagattgaacgtcctgaggacttgcgtgtgcgtactgta
gctaataagtcaaaaatgaaggtggccatcattcaggctattgaccgtaaggtggcgttg
gatgacattgccatgtcaaagggtattgagtttgaagagttactggatgagatagaagct
atcgtttactccggaacgaaattgaatattgactatttcttggaggatattatggatgaa
gaccacttgctggatatctatgattatttcaaggaatctaccactgataagattgacgat
gctctggatgaattgggtgatgactttacggaagaagaggtacgtttggtacgcatcaag
tttatttcagagatggcaaattga
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