Bacteroides humanifaecis: JXR92_003040
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Entry
JXR92_003040 CDS
T08258
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bhum
Bacteroides humanifaecis
Brite
KEGG Orthology (KO) [BR:
bhum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhum03032
]
JXR92_003040 (topA)
03400 DNA repair and recombination proteins [BR:
bhum03400
]
JXR92_003040 (topA)
Enzymes [BR:
bhum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JXR92_003040 (topA)
DNA replication proteins [BR:
bhum03032
]
Prokaryotic type
DNA Topoisomerases
JXR92_003040 (topA)
DNA repair and recombination proteins [BR:
bhum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JXR92_003040 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
UDB44651
LinkDB
All DBs
Position
767373..769775
Genome browser
AA seq
800 aa
AA seq
DB search
MQKNLVIVESPAKAKTIEKFLGKDFKVLSSYGHIRDLKKKEFSIDVDKDFKPHYEIPADK
KKIVTQLKEEAEQAETVWLASDEDREGEAIAWHLYEVLKLKPEHTRRIVFHEITKGAILK
AIENPRDIDINLVDAQQARRILDRIVGFELSPVLWKKVKPALSAGRVQSVAVRLIVERER
EIHAFQTEASYRVTAVFLVPDTDGKTVEMKAELAHRLKTKAEARKLLESCKAATFTISDI
TTRPLKKTPAAPFTTSTLQQEAARKLGFTVAQTMMVAQRLYESGLITYMRTDSVNLSELA
VNASRETISNLMGERYVHNRHFATKTKGAQEAHEAIRPTYMENAKIEGTPQERKLYDLIW
KRTIASQMADAEVEKTTVTIAISNETETFTATGEVVKFDGFLRVYRESYDDDVETQEDEA
RLLPPLKKGQKLEHEGITATERFTQHPPRYTEASLVRKLEELGIGRPSTYAPTISTIQQR
EYVIKGEKAGEERTYNVLNLQGNEITDNNHTEITGAEKSKLMPTDTGIVVNDFLIEYFPD
ILDYNFTASVEKQFDEIAEGDKQWTAILKTFYKKFHPSVENTLAAKTAHKAGERILGTDP
VSGKQVSVKIGRFGPVAQIGTAEDEEKPRFAQVKKEMSIETITLEEALELFKLPRTLGEY
EGKNVVVGAGRFGPYIQNNGLYASLPKTMDPMTVTLEEAIELLQKKQEAEAQKHIKKFEE
EPELEILNGRYGPYIAYKGSNYKIPKDIIPQDLNLQACLEIVKLQSDKDTGKSKRTAKAV
KATKTTKTTAKATAKTSKTK
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaaaccttgtcatagtcgagtctccggcgaaagcaaaaaccatcgagaaattc
cttggaaaagatttcaaagtcctttccagctacggccatatacgtgatttgaagaaaaaa
gaattcagtattgacgtagacaaagacttcaaaccgcattacgagataccggcggataaa
aagaaaatcgtaacccagctgaaagaagaagccgagcaggcagaaaccgtatggctggct
tccgatgaggaccgcgaaggggaagccatcgcatggcacttgtacgaagtgctgaaactg
aagccggaacacaccagacgcatcgtcttccatgaaatcaccaaaggtgccatcctgaaa
gcgatagaaaatccccgtgacattgacatcaacctggtcgatgcccagcaagcccgacgt
atcctggaccgtatcgtaggttttgaactttcaccggtattgtggaagaaagtgaaacct
gccctttctgcaggccgtgtacagtccgtagccgtccgtctcattgtagagcgcgaacgc
gagatacatgcattccagaccgaagcatcctaccgtgttaccgccgtattcctcgttccg
gacactgacggcaaaacagtggaaatgaaagccgaactggcgcaccggcttaagacaaag
gcagaagcccggaaattgctggagagctgtaaagcagccacgtttaccatcagcgacatc
actacccgtccgctgaagaaaactcccgcagccccgttcaccacctctaccttgcagcag
gaggctgcccgcaaactgggcttcaccgtggcacagaccatgatggtggcgcaacgtctg
tacgaatccggattgataacctacatgcgtaccgactccgtcaacctttccgaacttgcc
gtcaacgccagccgtgaaaccatctccaacctgatgggcgaacgttacgtacacaaccgc
cacttcgccaccaagaccaaaggagcgcaagaggcccacgaagctatccgccccacctat
atggagaatgccaagatagaaggtaccccacaggaaagaaagctgtacgacctcatctgg
aaacgtaccatcgcctcgcagatggcagatgccgaagtggaaaagacaaccgtaaccatt
gctatcagcaacgagacggagactttcactgcaaccggcgaagtggtgaaattcgacggt
ttcctccgtgtctaccgcgaatcatacgatgatgacgtagaaacccaggaagatgaggca
cgcctactgccccctctgaaaaaaggacagaagctcgaacatgaaggtatcaccgctacc
gaacgtttcacccaacaccctccccgctacacggaagcaagccttgtgcgcaaattggag
gaactgggtatcggacgtccgtctacctatgctccgaccatttccaccatccagcaacgc
gaatacgtgataaaaggagaaaaagcaggtgaagaacgcacctacaatgtgcttaacttg
cagggtaatgaaataacggacaacaaccatacagaaatcaccggagctgaaaagtcaaaa
ctgatgccgacagacaccggtattgtggtcaatgacttcctgatagagtacttcccggac
atccttgactacaacttcactgcgagcgtcgaaaagcaattcgacgaaatagccgaaggt
gacaagcaatggaccgccattctgaaaacattctataagaaattccatccttcagtagaa
aacacacttgccgcgaaaaccgcccacaaggcaggcgaacggattctaggaacagacccc
gtcagcggaaaacaagtgtctgtaaaaatcggacgtttcggcccagtagcacagataggt
actgccgaagatgaggaaaagccccgtttcgcccaggtaaaaaaagaaatgtccatcgag
accattacgctggaagaagcgctggagctgttcaaacttccccgtactctcggagagtat
gaaggcaagaatgtagtcgtaggtgcgggacgtttcggaccttatatccagaacaacggc
ttgtatgcctcgttacccaagacaatggacccgatgaccgttacgctggaagaagctatt
gaacttttgcaaaagaaacaagaagcagaagcccagaaacatatcaagaagtttgaggaa
gaaccggaactggaaatcctgaatggacgctatggcccttacatcgcttataaaggcagc
aactacaagattcctaaagacatcatccctcaagacctgaaccttcaggcttgtctggaa
attgtgaaactgcaaagcgacaaggatacgggcaagtctaagcggactgcaaaggcggtg
aaagcaacgaaaacgactaaaacaaccgccaaggcaactgccaaaacaagcaagacaaaa
tag
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