Bacteroides humanifaecis: JXR92_003935
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Entry
JXR92_003935 CDS
T08258
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
bhum
Bacteroides humanifaecis
Brite
KEGG Orthology (KO) [BR:
bhum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bhum03016
]
JXR92_003935 (truB)
Enzymes [BR:
bhum01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
JXR92_003935 (truB)
Transfer RNA biogenesis [BR:
bhum03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
JXR92_003935 (truB)
Prokaryotic type
JXR92_003935 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
PseudoU_synth_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UDB44818
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All DBs
Position
complement(989948..990655)
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AA seq
235 aa
AA seq
DB search
MNFKEGEVLYFNKPLGWTSFKVVGHARYHICRRIKEKKLKVGHAGTLDPLATGVMIVCTG
KATKRIEEFQYHTKEYVATIRLGATTPSYDLEHEIDATYPTEHITRGLVEETLKKFIGEI
QQVPPAFSACMVNGKRAYDLARKGEEVELKPKLLVIDEIELLDDGLDIAEPWIKVRVVCS
KGTYIRALARDIGEALQSGAHLTALERTRVGDVRLADCLNPLDFKEWIEAQEIDI
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaagaaggagaagtcctctatttcaataaaccgctgggatggacatcgttc
aaggttgtgggacatgcgcgttaccacatctgccggcggataaaggagaagaagttgaaa
gtaggccatgccggtaccctcgacccgcttgctacgggggttatgatagtctgtacgggc
aaggccacgaaacggattgaggaattccagtatcacacgaaggagtacgttgccaccatc
cggttgggtgccaccactccctcttacgacctggaacatgagatagatgccacctatccc
acggagcacatcacccgcggactggtggaggagacgctgaagaagttcatcggcgagata
cagcaagtgcctcccgccttctcggcatgtatggtgaacgggaaacgtgcctacgacctt
gcccgcaagggagaggaggtagagctgaaacccaagttgctcgtcatcgacgagatagag
ctgctggacgacgggctggatattgccgaaccgtggataaaggtacgcgtagtatgcagc
aaaggaacctatatccgcgccctggcacgtgacatcggcgaagccctgcagagcggcgcc
cacctcaccgccttggagcgtacccgtgtaggcgacgtccggctggcagactgcctcaat
cccctcgatttcaaagagtggatagaggcgcaggagatagatatttag
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