Bacteroides humanifaecis: JXR92_005955
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Entry
JXR92_005955 CDS
T08258
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bhum
Bacteroides humanifaecis
Pathway
bhum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bhum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JXR92_005955 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhum03021
]
JXR92_005955 (rpoC)
03400 DNA repair and recombination proteins [BR:
bhum03400
]
JXR92_005955 (rpoC)
Enzymes [BR:
bhum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JXR92_005955 (rpoC)
Transcription machinery [BR:
bhum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JXR92_005955 (rpoC)
DNA repair and recombination proteins [BR:
bhum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JXR92_005955 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
UDB45198
LinkDB
All DBs
Position
1519750..1524045
Genome browser
AA seq
1431 aa
AA seq
DB search
MAFRKDNKIKSNFSKISIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
IKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIQLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDAIIYYERYVVIQPGVLSDEVAQYDLLEEGEYLDLLEKLPKDNQFLEDS
DPNKFIAKMGAEAIYDLLSHLDLDSLSYELRNRAGSDASQQRKTEALKRLQVVESFRASR
GRNKPEWMIVRIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAPE
VILRNEKRMLQEAVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVDY
SARSVIVVGPELKMGECGIPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVIW
DILEHVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQMAVH
LPLSNEAILEAQMLMLQSHNILNPANGAPITVPAQDMVLGLYYITKLRKGAKGEGLTFYG
PEEALIAYNEGKCDIHAPVSVIVKDVDENGNIVDKMMHDTSVGRVIVNEIVPAEAGYINT
IISKKSLRDIISHVIKVCGVAKAADFLDGIKNLGYYMAFKGGLSFNLGDIIIPEEKEALV
QKGYDEVEQVINNYNMGFITNNERYNQVIDIWTHVNSELSNILMKTISSDDQGFNSVYMM
LDSGARGSKEQIRQLSGMRGLMAKPQKAGAEGGQIIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVSHDVIINEEDCGTLRGLVCTALKNNDETIATLYERI
LGRVSVHDIVHPTTGELIVAGGEEITEDIAQKIEDSPIESVEIRSVLTCESKKGVCAKCY
GRNLASSRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHAGGTAANIAANASIVAKNPARLE
FEELRTVDVIDEAGEPAKVVVGRLAEVRFVDVNTGIVLSTHNVPYGSTLYAADGEMVEKG
KMIARWDPFNAVIITEATGKIEFEGVIENVTYKVESDESTGLREIIIIESKDKTKVPTAH
IMTEDGELIRTYNLPVGGHVVVEDGQKVKAGEVIVKIPRAVGKAGDITGGLPRVTELFEA
RNPSNPAVVSEIDGEVTMGKVKRGNREIIVTSKTGEVKKYLVPLSKQILVQENDYVRAGT
PLSDGAITPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEIIVRQMMRKVEIDE
PGDTRFLEQQVVDKMEFMEENDRIWGKKVVVDAGDSQSLQAGQIVTARKLRDENSMLKRR
DLKPVEVRDAVPATSTQILQGITRAALQTSSFMSAASFQETTKVLNEAAINGKVDRLEGM
KENVICGHLIPAGTGQREFEKIIVGSKEEYDRMLANKKTVLDYAVDEKVEG
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagataacaagataaagagtaatttctcgaaaatctctatcggtttg
gcttctcctgaggaaatccttgagaattcgagtggtgaagttttaaagcctgaaaccatc
aactatcgtacgtataagcccgaacgcgacggattgttctgcgagcgcatctttggtcct
atcaaggattacgagtgccattgcggtaagtacaagcgtatccgttacaaaggcatcgtc
tgcgaccgttgtggtgtggaagtgactgaaaagaaagtgcgccgtgagcgtatgggacat
atccagctcgttgtgcccgtggctcacatttggtatttccgttcacttcccaacaaaatc
ggttacttgttgggcctgcccaccaagaaactggatgccattatctattacgagcgttat
gttgtcattcagccaggtgtactgtccgacgaagtggcacagtacgacttgctggaagaa
ggagaatacctggacttactggaaaagttgccgaaagacaaccaattcctcgaagattca
gaccccaataagttcattgccaagatgggcgcggaagctatctacgatttgctgtcacac
ctcgatcttgactctttgtcttacgaactgcgtaatcgtgccggaagcgatgcttcacaa
caacgcaagaccgaagccctgaaacgtcttcaggtagttgagtcgttccgtgcatcacgt
ggacgcaacaagcctgagtggatgattgtacgcattgtgccggttattccacccgaactt
cgtccgttggttccgttggatggagggcgtttcgcaacttctgacttgaacgatctttac
cgtcgtgtcatcatccgtaacaatcgtctgaagagattgattgaaatcaaggctcctgag
gtgattttacgtaatgaaaaacgtatgttgcaggaagctgtcgactctctgttcgacaac
tctcgtaaatcgagtgctgtgaagactgacgctaaccgtccgttgaagtcactttctgac
agtttgaagggcaagcaaggacgtttccgtcagaatttgttgggtaagcgtgtcgactat
tccgcacgttctgtaatcgttgtaggtccagagttgaaaatgggtgaatgcggtattcca
aaactgatggcagctgagctttataagccgttcatcatccgtaagctcattgagcgcggt
atcgtgaagacagtaaagagtgccaagaagattgtagatcgcaaggaacctgttatctgg
gatattctggaacacgtgatgaagggtcatccggtgctgttgaaccgtgctccgacactt
caccgtctcggtattcaggcattccagcccaagatgatcgaaggtaaggcaatccagctg
cacccgttggcatgtacggcgtttaatgccgacttcgacggtgaccagatggccgttcac
ttgccgctgagcaacgaagcgattctggaagcacaaatgctgatgctccagtcacacaat
atattgaaccctgctaacggtgctcctatcactgtgcccgcccaagatatggtactcggt
ttgtactacatcactaagttgcgcaaaggtgccaaaggtgaggggttgacattctacggt
ccagaagaagcactgattgcctataatgaaggtaagtgcgacattcacgctccggtaagc
gtcatagtgaaagacgttgatgagaatggcaacattgtggacaagatgatgcacgatacc
tccgtgggccgtgtcattgtcaacgaaattgttccggcagaagcaggatatatcaatacg
attatctccaagaagtcactccgcgatatcatcagtcacgtaatcaaggtgtgtggtgtt
gccaaggcagccgacttcctcgacgggatcaagaacctcggttactacatggccttcaag
ggtggtctgtcgttcaacttgggggatatcatcatcccggaagagaaggaagcattagta
cagaaaggttatgatgaagtagagcaggtaatcaataactataacatgggtttcatcacc
aacaacgagcgttacaatcaggtaatcgatatctggacacacgtgaactcagagttgtcc
aacatcttgatgaaaaccatttcaagcgacgaccagggtttcaactctgtatacatgatg
ctggattccggtgcccgtggttctaaggaacagatccgtcagctctccggtatgcgtggt
ttgatggcaaagccccagaaagcaggtgccgaaggcggtcagattattgaaaatccgatt
ctttctaactttaaggaaggtctgtccgtgttggaatactttatctctactcacggtgcc
cgtaagggtcttgccgataccgctttgaagacggctgacgccggatacctgacccgtcgt
ctggttgacgtatcgcacgatgtgattattaatgaagaagactgcggcacgctccgcgga
ttggtttgtacagcattgaaaaacaatgacgaaaccatcgccactctgtatgaacgcatc
ctcggtcgtgtatccgtacatgatattgttcatcctacaactggcgaactgattgtggct
ggcggtgaggaaattaccgaagacattgcgcagaagattgaagattccccgattgagagt
gttgaaatccgttccgtattgacctgcgaatccaagaagggtgtttgtgccaagtgttac
ggacgtaatctggcttccagccgcatggttcagaaaggtgaggcagtcggcgtaattgct
gcacagtctatcggtgagccgggtacacagttgacactgcgtacattccatgccggtggt
acggcagccaatatcgctgccaacgcaagtatcgtggctaagaaccctgcccgtttggaa
ttcgaagaactccgtacggtagacgttattgacgaagcaggcgaacctgcaaaggtagtg
gtaggccgtctggctgaagtgcgtttcgtggatgtcaacacgggtattgttctttctacc
cacaacgtaccttacggttctacgctctatgctgctgacggtgaaatggtagagaagggc
aagatgattgcccgttgggatccgttcaacgcagttatcattaccgaagctaccggtaag
attgaatttgaaggcgttattgaaaacgtgacttataaggtagagtctgatgaatctacc
ggtttgcgcgaaatcatcatcattgagtctaaggataagacgaaggtgcctaccgcacac
atcatgacagaagacggcgaactgatccgtacatacaacttgccggtaggtggccacgtg
gtggttgaggacggtcaaaaggtaaaggccggtgaagttatcgtgaagattccgcgtgcc
gtaggtaaagcgggtgatatcacgggtggtcttccccgtgtcactgagctgtttgaggca
cgtaacccgtctaatcctgctgtggtttcagaaatcgacggtgaggttaccatgggtaaa
gtgaaacgcggtaaccgcgaaatcatcgttacttccaagaccggcgaagtgaagaagtac
ctcgtaccgttgtccaagcagattttggttcaggagaacgactatgtacgtgccggtact
ccgttatcagacggtgctatcacacctgcggacatcctggccatcaaaggtcctacagcc
gtgcaggaatatatcgtgaacgaggttcaggacgtttaccgtctgcagggtgtgaagatt
aacgataagcactttgaaatcattgtacgtcagatgatgcgcaaggtggaaattgacgag
ccgggtgatacccgcttcctggagcagcaagttgttgacaagatggaattcatggaagag
aacgaccgtatctggggaaagaaggtggtagtggatgctggagattcccagagtttgcag
gctggtcagatcgtgacggcccgcaagctgcgtgacgagaactccatgttgaaacgccgc
gacttgaaacccgtggaagtgcgcgacgctgtacctgcgacttctactcagattcttcaa
ggtatcacccgtgctgcattgcagacttcaagcttcatgtcggctgcttccttccaagaa
acgacgaaggtgctgaacgaggctgccatcaacggaaaggtggaccgtctggaaggtatg
aaggagaacgtaatctgcggtcacctgattcctgccggtaccggacagcgcgagttcgag
aagattattgttggctccaaagaagagtacgaccgtatgcttgctaacaagaagacggta
cttgattatgctgtagacgagaaagtagagggataa
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