Bacteroides humanifaecis: JXR92_006120
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Entry
JXR92_006120 CDS
T08258
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
bhum
Bacteroides humanifaecis
Pathway
bhum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bhum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JXR92_006120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhum03021
]
JXR92_006120
03400 DNA repair and recombination proteins [BR:
bhum03400
]
JXR92_006120
Enzymes [BR:
bhum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JXR92_006120
Transcription machinery [BR:
bhum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JXR92_006120
DNA repair and recombination proteins [BR:
bhum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JXR92_006120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
SAM_EPH
NPL
Motif
Other DBs
NCBI-ProteinID:
UDB45231
LinkDB
All DBs
Position
1541377..1542369
Genome browser
AA seq
330 aa
AA seq
DB search
MAILAFQKPDKVLMLEADSRFGKFEFRPLEPGFGITVGNALRRILLSSLEGFAITTIKID
GVEHEFSSVPGAKEDVTNIILNLKQVRFKQVVEEFESEKVSITVENSSEFKAGDIGKYLT
GFEVLNPELVICHLDSKSTMQIDITINKGRGYVPADENREYCTDVNVIPIDSIYTPIRNV
KYQVENFRVEQKTDYEKLVLEITTDGSIHPKEALKEAAKILIYHFMLFSDEKITLETNDA
DGNEEFDEEVLHMRQLLKTKLVDMDLSVRALNCLKAADVETLGDLVQFNKTDLLKFRNFG
KKSLTELDDLLESLNLSFGTDISKYKLDKE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcgatattagcatttcaaaaacctgataaagtattaatgttggaagcggactctaga
ttcggaaaattcgaatttcgtccgttggagcccggtttcggtattaccgtgggtaatgca
ctgcgccgcatcctgctttcttcattggaaggttttgctatcactactatcaagatagac
ggtgttgagcatgaattttccagtgttccgggggcaaaagaggatgttactaacattatc
ttgaatctgaaacaagtgagattcaagcaagtagttgaagaattcgagagtgagaaagta
agtattacggtcgagaattcaagtgaatttaaagcaggtgacataggtaagtatttgact
ggatttgaagtgttaaatcctgaattagttatttgtcatttagattcaaagtcaactatg
cagatagatattacgatcaacaaaggtcgtggttatgttcctgctgacgaaaaccgcgaa
tattgcaccgatgtgaacgtaattcctatcgattctatttatactccgatacgtaatgtg
aagtatcaggtagagaacttccgtgtagagcagaagaccgactacgagaaactggtactt
gagattactaccgacggttccattcatccgaaagaagccctgaaagaagcagcaaagatt
ctgatttatcacttcatgcttttctctgacgagaagattacgctggaaacaaatgatgct
gacggcaatgaagagtttgatgaagaagtattgcacatgcgtcagttgctgaagaccaag
ctcgttgatatggatctctctgtacgtgccctcaactgtctgaaggctgcagatgtagag
actcttggtgacttggtacaattcaacaagacggatttgctgaaattcagaaacttcgga
aagaaatcgcttaccgagcttgatgatttgctggaaagtctgaatctgtcgtttggaact
gatatttctaaatataaattagataaagaataa
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