Bacteroides humanifaecis: JXR92_009115
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Entry
JXR92_009115 CDS
T08258
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
bhum
Bacteroides humanifaecis
Pathway
bhum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JXR92_009115 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhum03019
]
JXR92_009115 (rny)
Messenger RNA biogenesis [BR:
bhum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JXR92_009115 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Fez1
DsrD
DUF3818
Motif
Other DBs
NCBI-ProteinID:
UDB42559
LinkDB
All DBs
Position
complement(2302028..2303566)
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AA seq
512 aa
AA seq
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MTVVTIVLSIACFIVGGFASYLFFKHGLKNKYDGILRDAEAEAEVIKKNKLLEVKEKFLN
KKADLEKEVAQRNQKIQQAENKLKQRELVLNQRQEEIQRKKMEAEAVKENLEAQLSIVDK
KKEELEHMQRQEIEKLEAISGLSAEEAKERMVESLKEEAKTQAQSYINDIMDDAKLTASK
EAKRIVIQSIQRVATETAIENSVTVFHIESDEIKGRIIGREGRNIRALEAATGVEIVVDD
TPEAIVLSAFDPVRREIARLALHQLVTDGRIHPARIEEVVAKVRKQVEEEIIETGKRTTI
DLGIHGLHPELIRIIGKMKYRSSYGQNLLQHARETANLCAVMASELGLNPKKAKRAGLLH
DIGKVPDEEPELPHALYGMKLAEKFKEKPDICNAIGAHHDEVEMTSLLAPIVQVCDAISG
ARPGARREIVEAYIKRLNDLEQLAMSYPGVTKTYAIQAGRELRVIVGADKIDDKQTENLS
GEIAKKIQDEMTYPGQVKITVIRETRAVSYAK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgacagtagttacaatagtattatccattgcctgcttcattgtcggagggtttgcctcg
tacttgttcttcaagcacgggctgaaaaacaaatacgacggtatcctgagagatgcggaa
gcggaagcggaagtgattaagaagaataagttgctggaagtaaaggaaaaattcctgaac
aagaaggcagacttggaaaaagaagtggcccaacgtaaccaaaagatacagcaggcagaa
aacaagctgaaacaacgtgaattggtactgaaccagcgccaggaagaaatccagcgcaag
aagatggaagcagaagccgtgaaagaaaatctggaagcccaactgtccatcgtagacaag
aagaaagaagaactggagcacatgcagcgccaggaaatagaaaagctggaagccatttcc
ggactttctgccgaagaagccaaagagcgcatggtggaatccctgaaggaagaagccaaa
acgcaagcccagtcctacatcaacgacatcatggacgacgccaagctgacggcaagcaaa
gaggccaagcgcatcgtgatacagagcatccaacgtgtggctacggaaacagccattgaa
aactcagtaaccgtattccacatcgaatcagatgaaatcaagggacgtatcatcggtcgc
gaaggccgcaacatccgcgccctggaagctgccaccggtgtggaaattgtggtagacgat
actccggaagctatcgtattgtcagctttcgacccggttcgccgtgagattgcacgtctg
gcattgcaccagttggtaacagacggacgtatccacccggcacgtatcgaagaggtagtt
gccaaagtacgcaagcaggtagaagaggaaatcatcgaaaccggtaaacgtactactatc
gacctgggcatccacggcctgcatccggaacttatccgcattatcggtaagatgaaatac
cgttcttcatacggccagaaccttttgcagcatgcacgcgagacagccaatctttgcgct
gtgatggcatcagaactgggactcaacccgaagaaagcaaaacgtgccggactgctgcat
gatataggtaaggtgcctgatgaggaaccggaattgccgcatgcactctatggtatgaaa
ctggcggaaaagttcaaggaaaagccagacatctgcaacgccatcggtgcccaccacgac
gaagtggaaatgaccagcctgctggcccccatcgtacaagtatgcgatgccatttcagga
gcacgcccgggagcacgccgcgaaattgtagaagcatacatcaagcgcttgaatgacctt
gagcaactggcaatgtcctatccgggagtgacaaagacatatgccatccaggcaggccgt
gagctgcgtgtcattgtcggtgcagacaagattgacgacaagcagacggagaacctttcc
ggtgaaatcgccaagaagattcaggacgaaatgacttatccgggtcaggtgaagattacc
gttatccgtgagacacgtgcagtgagctacgcaaagtaa
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