Bacteroides humanifaecis: JXR92_009950
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Entry
JXR92_009950 CDS
T08258
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bhum
Bacteroides humanifaecis
Pathway
bhum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JXR92_009950 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhum03400
]
JXR92_009950 (mfd)
Enzymes [BR:
bhum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JXR92_009950 (mfd)
DNA repair and recombination proteins [BR:
bhum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JXR92_009950 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
DUF3638
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UDB42721
LinkDB
All DBs
Position
2494864..2498253
Genome browser
AA seq
1129 aa
AA seq
DB search
MNITELQQSYASHPNVEGVCRLLKDNSVRHLYCGGLYASAASLFSSVLVQRATCPLVFIL
GDMEEAGYFYHDLTQILGTEQVLFFPSSFRRAIKYGQKDAANEILRTEVLSRLQKGEEGL
CVVTYPDALAEKVVSRKELGENTLKLHAGERGDMDFVTDVLRSYGFEYVDYVYEPGQYAV
RGSIIDVFSFSSEYPFRIDFFGDEVESIRTFEVETQLSKERKESIVIVPDLSHSLEKRGS
GGMVSFLDFLPSDSLLAMRDFLWLRERIQTVHDESLTPQAIAARESEENGAITLEGKLID
GGEFTLRALDFRRMEFGNKPTGTPDATVSFHTTVQPIFHKNFDMVAESFREYLSRHYTIY
ICSDSLKQTDRIRAIFEDRGDNISFTAVERTLHEGFADDTLRICIFTDHQLFDRFHKYNL
KSDKARSGKVALSLKELNQFTPGDYVVHTDHGVGRFAGLVRIPNGDTTQEVMKIVYQNED
VVFVSIHSLHKVSKYKGKEGEAPRLNKLGTGAWEKLKDRTKTKIKDIARDLIKLYSQRRE
EKGFQYSPDSFLQRELEASFIYEDTPDQSKATSDVKADMESARPMDRLVCGDVGFGKTEV
AVRAAFKAVADNKQVAVLVPTTVLAYQHFQTFKERLKGLPCRVEYLSRARTAAQAKAVVK
GLAEGEVNILIGTHRILGKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLKVNVDTLTMTAT
PIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNEEIIADAVNFEMSRNGQVFFVNN
RISNLFELKTMIERHIPDCRVCIGHGQMEPAELEKIIFDFVNYDYDVLLATTIIESGIDI
PNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTPEAKRRLQAIENFS
DLGSGIHIAMQDLDIRGAGNMLGAEQSGFIADLGYETYQKILSEAVHELKTDEFADLYAE
ELKADGGVISGEQFVDECQVESDLELLLPADYVTGSSERMLLYRELDGLTLDKDVDAFRS
RLEDRFGPIPPETEELLRIVPLRRLAARLGVEKVFLKGGRMSLFFVSNPDSPYYQSQAFG
KVIAYMMKYTRRCDLREQNNKRSMLVKDVRTVEEAVCVLQEVVAMQVEE
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgaatataactgaactgcaacaatcttatgcttcccatcccaatgtagagggggtgtgc
aggcttctgaaagataactctgtccgtcacctatattgcggaggtttatatgcctctgcc
gcttctttgttttcgtctgtattggttcagcgggctacttgtccgctcgttttcattctg
ggcgatatggaggaagccggttatttctatcatgatttgacgcagatattggggacagag
caggtattgttttttccttcttcatttcgccgcgccatcaagtacgggcagaaggatgcg
gcaaacgaaatactccgtacagaagtgctgagtcgcctgcaaaaaggagaagaggggctt
tgcgtggtgacctatccggatgcgctggccgaaaaggtggtctctcgtaaggaactgggg
gagaatacactgaaactgcatgcaggcgagaggggggatatggactttgtgacggacgta
ttgcgcagctacggtttcgaatatgtggattacgtttacgagccggggcagtatgccgtt
cgtggcagtattatcgacgtcttttccttctcttccgaatatcccttccgtatagacttc
ttcggcgatgaggtggaaagcatccgtaccttcgaggtggaaacacagctctcgaaggag
aggaaagaaagcatcgtgatagttcccgacttgagccatagcctggaaaaaaggggaagc
ggcggcatggtgtcgttcctcgatttccttccgtcggacagcttgcttgccatgcgcgat
ttcctctggctacgcgaacgcatccagaccgtgcacgacgaatcgctcaccccacaggcc
atcgctgcccgtgagtcggaggagaatggagccatcacgctggaaggcaagctgattgat
ggtggcgagttcaccctgcgcgccctcgatttccgccggatggagtttggcaacaagccc
accggaacaccggatgccaccgtctcgttccatactacggtacagcctatcttccataaa
aacttcgacatggtggcggagagtttccgcgaatacctctcccgtcactacaccatctac
atatgcagcgacagcctgaaacagaccgaccgcatccgtgccatctttgaggaccgtgga
gacaacatatcctttaccgccgtagaacggacactgcacgaaggctttgccgacgacact
ttacgtatctgtatctttaccgatcatcagctgttcgaccgctttcacaagtataacttg
aagagcgacaaggcacgcagcggcaaggtggccttgagcctgaaggagctgaaccaattc
acccccggcgactatgtggtgcataccgaccacggtgtggggcgttttgccggactggta
cgtatccccaacggtgacaccacgcaggaggtgatgaagattgtctatcagaacgaagat
gtggtgtttgtctccatccactctctgcacaaggtttccaagtacaagggaaaggagggt
gaagcgccccgcctcaacaagctcggcaccggagcctgggagaagctgaaagaccgcacc
aagacgaagataaaggatattgcccgcgacttgataaaactctactcgcaacgccgcgag
gagaagggtttccaatacagtcccgacagcttcctgcaacgggagttggaagcctccttc
atctatgaggatacccccgaccaaagtaaggctacttccgacgtgaaggccgacatggag
agtgcccgtccgatggaccgcctggtgtgcggtgacgtgggcttcggcaagacggaggtg
gctgttcgtgccgctttcaaggctgtggcggacaataagcaagtggctgtactggtgccc
actaccgtacttgcctatcagcatttccagaccttcaaggagcgattgaaaggcttgcct
tgccgggtggagtatctgagtcgtgcccgcaccgctgctcaggcaaaggctgtagtgaaa
gggcttgccgaaggggaagtgaatattcttatcggtacccaccgtatcctgggaaaagac
gttaagttcaaagaccttggtttgttgattattgatgaggagcagaagttcggcgtctcc
gtcaaggagaaacttcgccaattgaaggtgaatgtggatacgctgaccatgacggctaca
cccattccccgtaccttgcagttttcgctgatgggtgcgcgcgacttgagcgtcatccag
acaccgccgcctaaccgctatcccatccagacggaagtgcacaccttcaacgaggaaatc
attgccgacgccgtcaatttcgagatgagccgtaacgggcaggtattcttcgtgaataac
cgtatttccaatctgtttgagttgaagaccatgatagagcggcacattcccgattgccgt
gtctgtatcggacacggacagatggagcctgccgaactggagaagataatctttgatttc
gtcaattacgattacgatgtgctgcttgccactaccatcatcgaaagtggcatcgacata
cccaatgccaataccattatcatcaaccaggcgcagaacttcggcctcagtgatttgcac
cagatgcgcggacgtgtggggcggagcaataaaaaagctttctgttacctgctggcacca
cctttgtcctcccttactcccgaagcaaagcggcgtctgcaagccatcgaaaacttctcc
gacctgggcagtggcatccacattgccatgcaagaccttgacatccgtggtgcaggcaat
atgctcggtgccgaacagagcggtttcattgctgacttgggctacgagacttatcaaaag
attctctccgaagctgtgcatgaactgaagaccgacgagtttgccgacctttatgccgaa
gaactgaaagcagacggaggcgtcatcagtggagaacagtttgtcgacgaatgccaggtg
gaaagcgaccttgaacttctgttgcctgccgattacgtgactggcagcagcgagcgtatg
ttgctctatcgcgagttggacggattgacactcgacaaggatgtggatgctttccgttcc
cgcctcgaagaccgcttcggcccgattcctcccgaaacggaagaactgctgcgcatcgtt
cccttgcgacgcctggctgcccgcctcggcgtggagaaagtctttctgaaaggtgggcgc
atgtccctgttcttcgtctccaatccggacagcccgtactatcagagccaggctttcggt
aaggtcattgcctacatgatgaaatatacccgtcgttgcgacctgcgcgagcagaacaac
aaacggagtatgctggtgaaggatgtcaggacggtggaagaagctgtctgtgtgttgcag
gaggtagtggcaatgcaggtggaggagtaa
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