Bombus huntii (Hunt bumble bee): 126864525
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Entry
126864525 CDS
T10446
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bhun Bombus huntii (Hunt bumble bee)
Brite
KEGG Orthology (KO) [BR:
bhun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bhun03016
]
126864525
Enzymes [BR:
bhun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
126864525
Transfer RNA biogenesis [BR:
bhun03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
126864525
Prokaryotic type
tRNA splicing ligases
126864525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
126864525
NCBI-ProteinID:
XP_050471924
LinkDB
All DBs
Position
4:5623821..5626528
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AA seq
506 aa
AA seq
DB search
MVVRQYQEELKYLEKITETCWRIKKGFQPNMKVEGVFYVNNTLERLMFDELKNACRPGAV
GGFLPGMKQIANVAALPGIVWKSVGLPDVHSGYGFAIGNMAAFDMNDPKSIVSPGGVGFD
INCGVRLLRTNLFEEDVLPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADSSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDQIYD
KWAACKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SQEGQDYLKAMAAAANFAWVNRSSMTFLSRQAFAKQFRQSPDDLDMHVIYDVSHNIAKIE
EHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTDQAM
KETFGSTCHGAGRALSRAKSRRNLDYTDVLEKLERQGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISRKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtagttaggcagtatcaagaagaattaaaatacttagaaaagataactgaaacatgt
tggaggataaagaagggttttcaacctaatatgaaggttgaaggtgttttttatgtaaat
aacacgttagaacggttaatgtttgacgagttaaaaaatgcatgcagaccaggagcagtg
ggtgggtttctcccaggtatgaaacagattgccaatgttgctgctcttcctggtattgtt
tggaagtccgttggattgcctgatgtacattctggatatggttttgcaattggtaacatg
gcagcatttgatatgaatgacccaaaatctatagtatcacctggtggagtcggatttgac
ataaattgtggagtacgtctattaagaactaacttgttcgaagaggatgttttacctgtg
aaggaacaacttgcccagagcatgtttgatcacattcctgttggtgttggttcaaaagga
atcatacccatgaacgcacgtgatttagaagaagccttagaaatgggaatggattggtct
ctcagagaaggttatatctgggcagaggataaagaacattgtgaagaatatggtagaatg
cttaatgcagattcttctaaggtatcaatgagggctaagaaacgtgggcttccacagcta
ggaacattaggtgcaggaaaccactatgcagagattcaagtagtagatcaaatttacgac
aaatgggcagcatgtaaaatgggtattgaagaaaagggtcaaatttgtgttatgattcat
tctggtagcagaggatttggacaccaagttgcaactgatgcacttgtacaaatggaaaag
gccatgaaacgagacaatatcgaaactaacgataggcagttagcttgcgctcatataaaa
tctcaagaaggtcaagattatctaaaagctatggctgcagctgccaattttgcatgggtc
aatagaagctctatgacattcctcagtcgacaagcatttgccaaacagttccgacagtct
cccgatgatttagacatgcatgttatatatgatgtctcccataatattgcaaaaatagaa
gaacatatggtcgacggaaaacagaaaacccttctagtgcataggaagggatctacaaga
gcatttccacctcaccatcctctgattcctgtagactatcaattaacaggtcaacctgtt
ttaattggtggtactatgggaacttgtagctacgttcttactggaactgatcaagctatg
aaagaaacatttggatccacgtgtcatggagcaggtcgagctttatctagagccaagtca
cgcagaaacttggactacacagatgtattagaaaaattagaacgacaaggaatatcgatt
agagtcgcttcgcctaagttagttatggaagaagcaccggagtcttacaaaaatgtgaca
gatgttgtggatacatgccatgctgcaggtatttcccggaaatgtataaaattaaggcca
attgcagttatcaaaggataa
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