Bombus huntii (Hunt bumble bee): 126865090
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Entry
126865090 CDS
T10446
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bhun Bombus huntii (Hunt bumble bee)
Pathway
bhun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126865090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhun03019
]
126865090
03041 Spliceosome [BR:
bhun03041
]
126865090
Messenger RNA biogenesis [BR:
bhun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126865090
Spliceosome [BR:
bhun03041
]
Complex B
Other components
Prp19-related factors
126865090
Complex C
126865090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_8
TPR_12
ARM_TT21_C
TPR_10
RPN7
DHR-2_Lobe_A
PPR
Microp_apicomplexa_6
4HB_MCP_1
Motif
Other DBs
NCBI-GeneID:
126865090
NCBI-ProteinID:
XP_050473165
LinkDB
All DBs
Position
4:10973097..10977762
Genome browser
AA seq
839 aa
AA seq
DB search
MLERKDPEGNLYVFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSSNLNIVYERALKE
LPGSYKLWYNYLRQRVNQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQ
CYITRTRQVFDRALRALPITQHHRIWPLYIEFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKRMEEAAKNPTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRV
RLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVEFGKFYEENGQIADARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENRYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEFCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATNAVLPEEKFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEDNT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVASNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNTSNSPSDIPADAMRLLDSKTQDNITTYKDSIKFVRG
AIEKDGKAESQVNNPDEIDIDIDDVDDAEADVEEDIPVEKQTIPSQVFGSLKTTDGEDD
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgtaaagatccagaaggaaatttatatgtttttaatgaagaagatttacca
tacgaagaagaaattttgagaaatccttattccgtgaaacattggcaacgttatatagat
catttaaaaagtacaaaaagtagtaatttaaacattgtgtacgaacgagcgttaaaggaa
cttcctggaagctataagttatggtacaattatcttcgtcaacgtgtcaaccaattgaaa
gggaggtgcataacagatccgctttatgaagacgtaaataatgcatttgagcgtgctttg
gtttttatgcataaaatgcccagaatttggatggactattgcacattgatgacagaacaa
tgttacattacgcgtactcgtcaagtttttgatcgagcacttagagctctccctatcacg
caacatcatcgtatatggccattgtatattgaatttttaaaaaagcataatgtctatgaa
actgcagttagagtttttagaaggtatcttaagctagctccagaagatacagaagagtat
atagaatacctgatatcaatcgggaggcttgacgaagcagctgtgaaacttgcacaaatt
gttaatcaagatgattttgtatcaaagcatggaaaatctaatcatcaattatggaatgaa
ttgtgtgatttaatatcaaagaatccttctaaaataaaatctcttaatgtagatgcaatt
attagaggcggtttaagacgttatactgatcagttaggccctctttggaattctttggcg
gattattatgttcgtagtggtttattcgaaagggcgagggatatttatgaagaagcaata
caaacagtgactactgttagagactttactcaagtgtttgatgcttatgcacaatttgaa
gaacttagtcttagcaaacgtatggaagaagctgcaaaaaatcctactgaagatgatgat
atagacctagaattgagattagcacgatttgaacatttaatggaaaggcgtttattactt
ctgaattctgtattactcagacaaaatcctcataatgtacaagaatggcataaaagagtt
aggctttatgagggacaaccacacgagattattaatacatatacagaagctgtacagact
gtacaaccacaattggcagtaggtaaattgcatactttgtgggttgaatttggtaaattt
tatgaagaaaatggtcaaatagcagacgctagagtagttttcgagaaagcaactcatgtt
ccctatactaaagtcgatgatcttgcttctgtatggtgtgaatgggcagaaatggaaatt
aggcatggaaattataaagaagcgttaaaactgatgcatcgcgctactgctatgccattc
cgtaaggtagcttaccatgacgaaacagaaacagttcaaatgagattgtataaatcttta
aaagtttggtctatgtatgccgatttagaagaaagttttgggactttcaagacctgcaaa
gctgtgtacgacaaaattatagatctaaaaatcgcaacgccgcaaatcattattaattat
ggactctttctcgaagaaaatagatattttgaagaagctttcagagcttatgaaaaaggt
attgcactcttcaaatggcctaacgtttacgatatatggaatacgtatcttacaaaattt
ttaaaacgttatggtggaacaaagttagaacgaacgcgagatttatttgaacagtgttta
gaattttgtccaccaaaatatgccaaagccttgtatttactgtatgcaaaattagaagag
gaacatggtttggctaggcatgcaatgtctgtatatgaacgagcaactaatgctgttctt
cctgaagaaaaatttgagatgttcaacatatatattaaaaaagcagcagacatatatggt
gtcccaaaaacgaggcagatatatgaaaaagctatcgaagtacttaatgaagataatacg
agagaaatgtgtttacggttcgcagaaatggaaacgaaattaggagaagttgatagagct
cgggcaatatatgcgcactgcagtcaaatttgcgatccaagggtggcttcaaatttctgg
caaatatggaaagagtttgaagtgagacatggtaatgaagacactatgcgtgaaatgctt
cgaattaagcgtagtgtacaagctatgtacaacactcaagtgaatatgatgtctgcacaa
atgttaaataatacatcaaactcaccatctgatataccagcagatgcaatgcgtcttttg
gatagtaaaacacaggataatattaccacatataaggacagtattaaatttgttcgtggt
gcgatagaaaaagatggtaaagcagaatctcaagtaaacaatccggatgaaatagatatt
gatattgatgacgttgatgacgctgaagcagatgtagaggaagacatacctgttgagaaa
caaactattccatcacaagtatttggtagtttaaagacaactgatggtgaagatgattaa
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