Bombus huntii (Hunt bumble bee): 126865649
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Entry
126865649 CDS
T10446
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
bhun Bombus huntii (Hunt bumble bee)
Pathway
bhun03440
Homologous recombination
bhun03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bhun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
126865649
03450 Non-homologous end-joining
126865649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhun03032
]
126865649
03400 DNA repair and recombination proteins [BR:
bhun03400
]
126865649
DNA replication proteins [BR:
bhun03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
126865649
DNA repair and recombination proteins [BR:
bhun03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
126865649
BRCA1-C complex
126865649
NHEJ (non-homologous end-joining)
MRX complex
126865649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
Rad50_zn_hook
SbcC_Walker_B
AAA_21
SMC_N
AAA_29
AAA_16
AAA_13
ABC_tran
AAA_22
Motif
Other DBs
NCBI-GeneID:
126865649
NCBI-ProteinID:
XP_050474384
LinkDB
All DBs
Position
5:11462088..11468831
Genome browser
AA seq
1387 aa
AA seq
DB search
MSRIRRLSIRGIRNFGDLNDEAKIRFSRPLTLILGPNGTGKTTIIEALKFATCGEFPPGS
DRGKFFIHDPTLSAAPSIRGVVKAEIIDAAGNMYIICRTIESTKGNVSVKFKTLDNALSR
IMKGQNKPVSISNKCANVDAELTLAMGVSKPILDYVIFCHQEDLNWPFQDGKKLKEKFDE
IFDSARFNKALENIMKYIKDMNQKMHILKEQKQNCQLIVNEVVDKEAKFEDNKKRLEDSK
AKIEEFDKELEPVQQKIKKFEKLDADYKNLQNEEKRKKAEYDMFKQQLNRLEEDLQYVFE
GTKEELLKQIESHDEELIRQTDKIEELEKRLKNIAGKESSISSDLSNERVSNGSLRQQIK
DQERKVNLRNAILNEILSSWNLDNIDANVSELEIMALTSRLTEKMEELRHCVEQKRLKRE
EEENALHRAIDSLRSKHSKVESEKNLKESEVTQTKEEINKIKLDIVQLGAAASKLSSIEL
RIQEVQKKVQELNEAMDVNVIKKEVANKIKIRNEMETLLNTVDEEITLLSKQSMQQAELD
LHKSTLHSKEKEIEELKNKREKEIMTLFDIKELSQTKLKTNLDVVQKQLANEVESINQEI
QAEERRITTLETTISHIEHELQNKKREINSDKEKVSSVCHYKSFDETLLLQSKKVKDLQD
KRGMYAHQSVAYKEYMKQLRETNPSCPLCHRDFDERENVVTLLKEMESEMENHPNRLKEC
ERELKTQQEKYDKMLQLKPVVEKIIQLEESELEKLMNSLEKSKNKLSISRTTVMELETKK
SCPKKKLAICKDIVGDIMLWDTYIDDIFKLKQTIDNLQIRMTAAGIKTKRSLEEAQSQRE
ELKMSLKNIRDNIEELQSKINMHNEKLSNARQEQNTLQEEQLRIQSDIQKVKELKEKLET
LYSKEISLWKSINMLKKQVTIAETELNSELEKLEEKRKDNSAKLECDRKLVTDAVRRLSE
LQRIQDEVDISIYSNVPESLESSEKKIKDYEKLLNELLCEKSDIETTINKLKENVTRQEV
RKRELSDNLALLQVQETIKNLQQQYLRIKEKLNAINHSQVLNDWKNVQSREQTILRQQNI
IKGNQEELERTLQQYTQELKKDIYRQARKNYKSKCIELTVIEEAILNLKAYSKALDVAMI
QYHEERMATVNRIIKQMWKLVYTGKDTTSIEIHTDATEGIGSTRRTYNYKLVQMKHGHEI
DMKGRCSAGQKVLASIIIRLALAETFCKDCGILALDEPTTNLDQENADSLAEALATVVKL
RSQHQKNFQLIVISHDEKFLFKLAELNSNKGFYQLYRKQTGYTAIRHCLVNSQDCIESDP
VKQESDEEESSNEESEERFILQDKLHETTSQRKAPNEQTHKKRRHISDDDADPSTESATS
KKRYIFQ
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgaataagaagactttctattcgtggtattcgtaattttggcgatctgaatgat
gaagctaagattcgattttctcgtcctttgacacttattcttggtccaaatggtactgga
aaaacgacaattatcgaagctctaaaatttgctacttgcggtgaatttccacctggttca
gatcgaggaaaattctttattcatgatccaactctatcggcggcaccatcgatccgaggt
gttgtaaaagctgaaataattgatgcagcaggtaatatgtacataatatgtagaacgata
gagtcaacaaaaggaaatgtgtcagtgaaatttaaaactctcgataatgctttaagcaga
ataatgaaaggtcaaaataagccagtatcaatatctaataaatgtgctaatgttgatgca
gaacttacattagcaatgggagtttcaaaacccattttggattatgtgatcttttgtcac
caagaagaccttaattggcctttccaagatggtaaaaaattaaaagaaaaatttgatgag
atttttgatagtgctagatttaataaagctcttgaaaacattatgaaatatatcaaagat
atgaatcaaaagatgcatatattgaaagagcaaaaacaaaattgccaacttattgttaat
gaagtagtagataaagaagcaaagtttgaagataataaaaaacgattggaagattccaaa
gccaaaattgaggaatttgataaagaattagaacctgtgcagcagaaaattaaaaaattt
gaaaaattagatgctgattacaaaaatctgcaaaacgaagaaaaaagaaaaaaagcagaa
tatgacatgttcaaacaacaactgaatagattagaagaagatttacaatatgtgtttgaa
gggactaaagaagaattattaaagcagatagaatcgcatgatgaagaattaataagacaa
actgacaaaatagaagagcttgaaaaaagattaaaaaatattgctggaaaagagtctagc
atatcaagtgatttatctaatgaaagagtatccaatggttctttaagacaacaaattaaa
gatcaagaaaggaaggttaatcttcgcaatgcaatattaaatgaaatattatcttcttgg
aatcttgataacattgatgcaaatgtatcagaattagaaataatggccctcactagccgg
ctgactgaaaagatggaagaactacggcattgcgtagaacagaaaagattgaaaagagaa
gaagaagaaaatgcattacacagagcaattgattctttacgtagcaaacattcaaaagta
gaatcagaaaaaaatcttaaagaaagtgaagtaacacaaacaaaagaagaaattaataaa
ataaaattggatattgtgcagcttggcgcagcagcaagtaaactaagttccattgagtta
agaatacaagaagtacagaaaaaagttcaggaattaaatgaagcaatggatgtgaatgtt
ataaaaaaagaagttgctaacaaaattaagattcggaatgaaatggaaacacttttaaat
acggttgatgaagaaataactttattatcgaaacagagtatgcagcaagctgaattagat
ttacataaatctacattgcattctaaagaaaaagaaatagaagaattaaagaacaaacgt
gaaaaagaaataatgactttgtttgatattaaagaactatcccaaactaaattaaaaact
aatctagatgtggttcaaaaacaattggcgaatgaagtggaatctattaaccaagaaatt
caggcagaagaacgtcgaataactacattagaaacaacaatatcacatattgaacatgag
cttcaaaataaaaaaagagaaataaattcggataaagaaaaagtttcatcagtttgtcac
tacaaaagttttgatgagactttattattacaatcgaaaaaagtaaaagatcttcaagac
aaaaggggaatgtatgctcatcaaagtgtagcttataaagagtatatgaaacaattaaga
gaaacaaatccttcttgtcctctatgccatagagattttgacgaacgtgaaaatgttgta
actttattaaaagaaatggaaagtgaaatggaaaatcatccaaatcgcttgaaggaatgt
gaaagagaattgaaaacacaacaggaaaaatatgataaaatgttgcaattaaaaccggtc
gttgaaaaaataatacaattagaagagagtgaattagaaaaattaatgaatagtttagaa
aaatcaaaaaataagttgagtatatctcgaacaactgtaatggaattagaaacgaaaaaa
tcttgtcctaaaaaaaaattagcaatatgcaaagatatcgtaggtgatattatgttatgg
gatacatacattgatgacattttcaaactgaaacaaacaattgataacttacagattcgt
atgactgctgcaggcattaagaccaaacgtagccttgaggaagctcaaagtcaaagagaa
gagttgaaaatgtctttaaaaaatattcgcgataatattgaagaattacaatctaaaata
aatatgcataatgaaaaattaagtaatgctcgacaagaacaaaatacattacaggaggag
caattaaggatccaatcagatatacaaaaagtaaaagaattgaaggaaaaactggaaacc
ttgtactcaaaagaaatttctctttggaaatcaattaatatgttgaagaaacaagtaact
atagcagaaaccgaattaaattcagagcttgagaaattagaagaaaagaggaaagataat
tcggcgaaactggaatgtgatagaaaattggtaacagatgcagttagacgtttatctgaa
ttacaaagaatacaggatgaggttgatatttccatatacagtaatgttcccgaatcttta
gaaagctctgaaaagaaaataaaagattatgaaaagttgcttaatgaactgctttgtgaa
aaaagtgatatagaaacaacgattaataaattaaaggaaaatgttactcgtcaggaagtt
cgaaaaagggagttgtcagataatcttgcactgctacaagttcaggaaacaatcaaaaat
ttacaacaacaatatttaagaataaaggagaaattaaatgctataaatcattctcaagta
cttaacgattggaagaatgtacaaagtagagaacaaactatactccgtcagcaaaatata
attaagggaaatcaagaagaattggaaagaacactgcagcaatatacgcaagaactaaaa
aaggatatatatagacaagctcgtaaaaattataaaagcaaatgcatcgaattaacggtt
atagaagaagctatattaaacttaaaagcatatagcaaagcattggatgtggctatgata
caatatcatgaagagcgtatggccacagttaatagaatcattaaacagatgtggaaactt
gtatatactggaaaagatacaacatcaatagaaattcatacagacgcaaccgaagggata
ggtagcacaagaagaacatataattacaaattagttcaaatgaaacatggtcatgaaata
gatatgaaaggtcgttgtagtgctggtcaaaaagttctagcgtcgataattataagactc
gctttagcagaaacattttgtaaagattgcgggattcttgcattggatgaaccaacaaca
aatttggatcaagaaaatgctgatagtctagcagaagcattggctacggttgtcaaattg
cgatcacaacatcagaaaaattttcagttaattgtaattagtcacgatgagaaattttta
ttcaaattagctgaattaaacagtaataaaggattttatcaactttaccgtaagcaaacc
ggttacacagcaattagacattgtctagtgaacagtcaagattgtattgagtcagatcct
gtaaaacaagaatctgatgaagaggaatcgtctaatgaagaaagtgaagaacgtttcatc
ttacaagataaattacatgaaacaacttcgcaaagaaaagcgcctaacgagcaaacacat
aagaaaagaagacatatttcggatgatgatgctgatccttctactgaaagcgcaacatca
aaaaaaagatatatatttcaataa
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