Bombus huntii (Hunt bumble bee): 126872406
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Entry
126872406 CDS
T10446
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
bhun Bombus huntii (Hunt bumble bee)
Pathway
bhun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126872406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhun03041
]
126872406
Enzymes [BR:
bhun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126872406
Spliceosome [BR:
bhun03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
126872406
Complex B
126872406
Complex C
U2 SnRNP specific factors
126872406
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
MscL
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
126872406
NCBI-ProteinID:
XP_050488285
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All DBs
Position
13:2784630..2789346
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AA seq
774 aa
AA seq
DB search
MSYHRGGGNKPKGFGFAGFQMTGTKRSGSNVPPPPPNSTLSKQGYHTMNSITENALSACW
GMPKKRSKTEEEYFEDDDDPPPFSLEYIPAPGSPTYDWMKKSTSKEDSDSEEDPLDAFMA
GIDAEVKRNNYEAQLAEDERKEEKSKGFRADIDGEDDEESYYRYMEENPTAGLQQEESDQ
EIDYDEDGNPIAPPKKKDIDPLPPVDHSEIKYESFEKNFYNVHDEIANLSKQQIDDLKKT
LGIKVSGPSPPNPVTSFGHFGFDDALIKAIRKNEYTQPTPIQAQAVPAALSGRDIIGIAK
TGSGKTAAFIWPMLVHIMDQRELKAGDGPIGLILAPTRELSQQIYQEARKFGKVYNIQVC
CCYGGGSKWEQSKALEGGAEIVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFE
PQVRSICNHVRPDRQTLLFSATFKKRVEKLARDVLTDPVRIVQGDVGEANADVTQHVIVF
NNNPTGKWTWLLQNLVEFLSSGSLLIFVTKKLNAEELANNLKLKEFDVMLLHGDMDQIER
NKVITAFKKKEVTTLVATDVAARGLDIPHIRTVVNYDVARDIDTHTHRIGRTGRAGEKGT
AYTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQSAWFRKSRFKGGKGKSLNVGGAG
LGFRGRPETSSTSSCGSSSQGSKDISEVVKKLERHGPGSDRLSAMKAAFRSQYNSQFRAS
SDHTWEQTITRPSVIMPPPPPVPPKPNTEQSKTQDVQSTNIGGERKRVRKSRWE
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgagttatcaccgtggtggtggtaataagccaaaaggctttggatttgcggggtttcaa
atgactggtacaaaaagaagtggctctaacgtaccaccacctccgccaaattctactcta
agcaagcaaggctatcacactatgaattctattaccgaaaatgccttatctgcatgctgg
ggaatgccaaagaagcgtagcaaaactgaggaggaatactttgaggatgatgatgatcct
ccgccattttccttggaatatattccggcacctggatctcccacttacgattggatgaaa
aaatcaacttcgaaagaagatagcgatagcgaggaagatccgctagatgcatttatggct
ggtatagacgcagaggttaagagaaacaattatgaagcacaactggcggaggacgagcgc
aaagaagaaaaatccaagggatttagagcggatatcgatggcgaggacgacgaggaaagt
tactacaggtatatggaagaaaatccaactgcgggtttgcaacaagaggaatctgaccaa
gagatcgattacgatgaagacgggaatccgatcgcgcctccaaaaaagaaagatatcgat
cccttacctcctgttgatcatagcgagataaaatacgaatctttcgagaaaaatttttat
aacgttcatgatgagatcgctaatttaagtaaacaacaaatcgacgatttgaagaaaact
ttgggaataaaggtatctggtccgtctccgccgaatccggttaccagtttcggtcatttt
ggtttcgatgatgcgttaataaaggctattagaaaaaacgaatacactcaacctacccct
atccaagctcaagcagttccggccgcattgagcggcagggatataataggtatagcgaaa
accggtagcggtaaaacagcagcttttatttggccaatgttagttcacataatggatcaa
agagaattgaaggcaggtgacggacccatcggtttaattcttgctcctacgagagaattg
tcacaacagatttaccaagaagcaaggaagttcgggaaagtgtataatattcaagtgtgc
tgttgttacggcggtggcagcaaatgggagcaaagtaaagcattggaagggggtgcggaa
atagtagtcgcaacgccgggtagaatgatagatttagttaaaatgaaagcaacgaattta
accagagtaacatttctagtattggatgaagctgatagaatgttcgatatgggtttcgag
ccgcaagtgcgttcaatatgtaaccacgtaaggccagacaggcaaacattgttgttcagc
gcaactttcaaaaagagggtagaaaagcttgcgagggacgttctgacggatccggttagg
atagtacaaggggacgtcggcgaggcgaatgctgatgtcacgcaacacgtgatagtgttc
aataataatcctactggcaaatggacgtggttgttgcagaatctagttgaattcttgagc
tctggtagtctgttgattttcgtaactaaaaagctcaatgcagaggaacttgcaaacaat
ctcaagttgaaagaatttgacgttatgctgttgcatggtgatatggaccaaatcgaaagg
aacaaagtaataacggcttttaaaaagaaggaagttactacactggtcgctactgacgtt
gctgctcgaggtttggacattccacatatcagaaccgttgttaattacgacgtcgcacga
gacatagatactcatacacataggataggtagaactggtcgagcgggtgaaaaaggaaca
gcgtatactcttgtaacagaaaaagacaaagaattcgcaggtcacctagttcgaaatttg
gagggtgcaaatcaggaagtaccaaagagtctcatggatttagcgatgcaaagcgcttgg
ttccgcaagtcaaggttcaaaggtgggaaagggaagagtttgaacgtcggaggggccgga
cttgggtttaggggaagaccggaaacatcttcaacttcgagttgtggttcctcgtcgcaa
ggatctaaggacataagcgaagttgttaaaaaattagaaagacatggaccaggtagcgat
cggttatcggccatgaaagctgcttttcgtagtcagtacaattctcagtttcgggcatcg
tcggatcatacgtgggaacaaactattacacggccttcggtgataatgcccccaccacca
cctgtacctccgaaaccaaatacggaacaatcaaagactcaggatgtacaaagtacgaat
atcggaggagaaaggaagagagttagaaagagtcggtgggaataa
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