Bidens hawaiensis: 143529083
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Entry
143529083 CDS
T11418
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143529083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143529083
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
143529083
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143529083
NCBI-ProteinID:
XP_076881069
LinkDB
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Position
Unknown
AA seq
856 aa
AA seq
DB search
MDPRVTPDPQLQNPSRKANALKQFTSPTKTPNFASSISNLSNPSSTIPCNKDFHFYFNFD
EFKNPVQEIAKSSESILESIGSSAEQVSGKKQVNLLNFSDNDGVYDWLVNFNDELFERFD
ASVDELMKLRNKEEVKGVGVKNVVSDDGFQKGLVKDNKLGDSSSVKVVSRDGNAVGTPKA
KVPFHVASIRRPQDVYKILVNNDNQPFEHVCLQRSADGSRFIHPLENLSVMDFIDRTVSD
VEPVKPPPVESTSFKLVQDVKDLKELAAKLRDADEFAVDLEHNQYRSFQGLTCLMQISTR
TEDFIVDTLKLRVQIGPHLREVFKDPTKRKVLHGADRDIIWLQRDFGIYVCNMFDTGQAS
RVLKLERNSLEYLLRHFCDVAANKEYQNADWRLRPLTKEMLRYAREDTHYLLYIYDVMKR
RLLSLPKDPDCTEEPLVEVYQRSYNLCMQLYQKELMTKNSYLSIYGLHAADLSGQQLAIV
AGLCEWRDGIARSEDESTGYILPNKVLIEIAKQMPVTLGKLRHVLKSRLHYIERNLGAVV
SIIRHSMQNAVAFEPVAKKLKEEHIEMMAARNAKLNNGEEVAGESNSNVGEDDSFEKEVG
NFIVGANQSHKLDGSSGSRVSIEVQKKPSRAFGAMFGSTAGKRKFNSESKATEESKVEQI
KSSVSLPFRSFADKTEVSHPVVKERPSTPQEIPVLPLASEPVTDVIMLDSDSDIEEEEEK
PGNDEGSERKTEGENSVILLDSDSDCSDEEKDGNEGAVPLSGLSASSQKRVETANETKKS
NPGAEDGGSGGLVEVKPFDYAAATNEVRFGEDGSDGEKGGGGGRKESAGGESSGDFRLGR
RRQAFPSAGNRSSTFR
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggatccacgggtcaccccagacccccaattacaaaacccatcacgcaaagcaaacgcc
ttgaagcaattcacatcacccaccaaaacccctaatttcgccagttcaatttcaaaccta
tcaaacccttcaagcaccatcccatgcaataaagactttcacttttacttcaatttcgac
gaattcaaaaacccagttcaggaaatagctaaatcttcagaatcgatactcgaatcgatc
ggatcgtccgccgagcaagtttcaggcaaaaaacaggtgaatttactaaattttagtgat
aatgatggagtttatgattggttggttaactttaatgatgagttgtttgaaagatttgat
gcttcggttgacgagttaatgaaattaaggaataaggaagaggtgaaaggggttggggtt
aagaatgtagttagtgatgatgggtttcagaaagggttagttaaggataataagttgggt
gattcgtcgtcggttaaagttgtttcgagagatgggaatgcggtggggacgccgaaggcg
aaagttccgtttcatgtagcgtcgattcggaggccgcaggatgtgtataagatactggtg
aataatgataatcagccgtttgaacatgtttgtttgcagaggagtgcggatgggtccagg
tttatacacccgttggagaatctttcagttatggattttattgataggacggtcagtgat
gtagagccggtaaaaccgcctccggttgaaagtacatctttcaagcttgtacaagatgta
aaggacttgaaggagttagctgctaaattgcgtgatgccgatgaatttgcggttgatttg
gaacacaatcaatatcgatcatttcaagggttaacgtgcttgatgcaaatatctacaaga
acagaagattttattgtggacacattgaaactacgggttcaaatcggcccgcatctacga
gaggttttcaaggatcctaccaaaagaaaggttttgcatggagctgatcgggatattata
tggctgcaacgtgactttggtatatatgtttgcaacatgtttgatactggacaggcatca
agggtgttaaagttggagaggaattctctagagtatctattgagacacttttgtgatgtc
gctgcaaataaggaataccaaaatgccgattggcgactgcggccgttgactaaagaaatg
ctgagatatgccagagaagacacacattatcttttgtatatatatgatgttatgaaaaga
aggctgctttcattaccaaaagaccctgactgcactgaagaaccacttgttgaggtatac
caacgcagttacaatctatgcatgcaactctatcagaaagaacttatgaccaagaactca
tatctaagcatttatgggttgcatgctgctgatctcagtggccagcaacttgccattgtt
gcaggactttgtgagtggagagatggtattgctcgttcagaagacgaaagtactggttat
atattgccaaacaaagttcttattgaaattgcaaagcaaatgccagttacactcggaaaa
ttacgccacgtattgaagtcgaggctccattacatcgagcgaaaccttggtgcggttgtt
agtataattaggcattcgatgcagaacgcggttgcatttgaacccgttgccaagaaattg
aaggaagaacacattgaaatgatggctgcaagaaatgctaaacttaataatggtgaagaa
gttgcaggtgaaagtaatagtaatgttggtgaagatgactcgtttgaaaaggaagttgga
aactttatcgttggagcgaatcaaagccataaattagatggatcttctggttcaagagta
agcatcgaggtacaaaagaaaccgagtcgtgcctttggagccatgtttggaagcacagca
ggaaagagaaagttcaattcagaatcaaaggctaccgaggagtctaaggttgaacagatc
aaatcttctgtgtcactcccattccgttctttcgctgataaaaccgaggtttcacatcct
gttgtgaaagaaagaccgtctacacctcaagaaataccggttttgcccctggcttctgaa
ccggtaaccgatgttatcatgctggattctgattctgatattgaggaggaagaggaaaaa
ccgggaaatgatgagggtagtgagcggaaaacggaaggtgaaaacagtgtgatattgttg
gattccgattccgattgttccgatgaagaaaaggatggaaacgagggggccgttccgctg
tcgggtctttcagcaagctcccagaagcgtgtagaaactgctaacgagacgaaaaagtca
aacccgggggcagaggatggtggttcaggcgggctcgtggaggtgaaaccgtttgactat
gcagcggctacgaatgaagtgcggttcggggaagacgggtcagatggggaaaagggcggt
ggtggtggtcggaaggaatcggctggtggtgaaagtagtggtgattttcggttgggtagg
cggcggcaggcttttccgtcggcaggtaaccggagttcaactttccggtga
DBGET
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