Bidens hawaiensis: 143529343
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Entry
143529343 CDS
T11418
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143529343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143529343
Enzymes [BR:
bhw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
143529343
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143529343
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143529343
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143529343
NCBI-ProteinID:
XP_076881277
LinkDB
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Position
Unknown
AA seq
606 aa
AA seq
DB search
MLSVLRVHLPSDIPIVGCELSPYVLLRRPDQSVFADDVPESAPVDGHFLRYKWYRIQSDK
KVAICSIHLSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHERAATAIAENG
NEEDEMFGRFDNNNNNNNNNNNNSNQTLSSSQSLPSLANGASTLLYPASVTQRNGGETWF
EVGRSKTYTPTADDVGHVLKFECVAVDLETKSTVGPLNTILTSRVIPAPSPSPRRLISVG
SADVTAGNLDSSLGNFTVLSYNILSDTYATSDLYGYCPSWALSWPYRRQNLLQEIVGYRA
DIICLQEVQSNHFEEFFAPELDKHGYQALYKKKTAEVFNGSIMTIDGCATFFRRDRFSHV
KKYEVEFNKAAQSLTDALVPSAQKKTALSRLVKDNVALIVVLEAKFGDLGVDNPGKRQLF
CVANTHVNVQQDLKDVKLWEVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAIG
KVDPIHPDLAVDPLGILRPATKLTHALPLVSAYSSFARIGGGLGYEQQKSRVDPATNEPL
FTNCTRDFIGTLDYIFYSADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALMAEFRC
KPRTRR
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtgctgagagtacaccttccgtccgatattccgattgtgggctgcgagctt
tcgccatacgttcttcttcgacgtcctgatcagtctgtcttcgccgatgatgtgccggag
tctgcacctgttgatgggcattttttgagatataagtggtaccgtatacaaagtgacaaa
aaagttgcaatttgcagcatacatctatcagaacaagccactttacaatgtttaggttgt
gttaaagccaaaatacccgttgccaaaagctaccattgttcccctaaatgtttttccgac
gcatggcaacaccatcgtgttcttcacgaacgtgctgcgactgctattgctgaaaatgga
aacgaagaagatgaaatgttcggtcgattcgataacaataataataataataataataat
aataataatagtaatcaaaccttatctagttcacaatctctcccaagccttgcaaacggt
gcatccacactgttatatcctgcatctgtgacacagaggaatggtggtgaaacatggttt
gaagtcgggcggtccaaaacctacacaccaaccgccgatgatgtcggtcatgttttgaag
tttgaatgtgtggctgttgacttagaaacaaagtcaacagttggaccattgaacactata
ctgacatcacgggtgatcccagctccatcccctagccctcggcggttgatttcagttggt
agcgctgacgtgacggccgggaatttggattcctccttgggaaattttacagtgttgtca
tataatattttgtccgacacgtatgccacaagtgatttatacggttattgcccttcgtgg
gccctttcttggccctatcgtagacaaaacttgttacaggaaatcgttggatatcgagcg
gatataatttgtcttcaagaggttcaaagcaatcattttgaggaattttttgcccccgag
cttgacaaacatggatatcaggctctatataaaaagaaaaccgctgaggttttcaatggc
agtattatgactatcgacggatgtgcgacatttttccgacgagatagattttcacatgtc
aaaaaatacgaggttgagtttaataaagctgcacagtctttaactgatgctttagttcct
agtgctcagaagaaaaccgctctaagtcggttggttaaggataatgttgcactaattgtt
gttctagaagcaaagtttggtgatcttggtgttgataatccaggaaagcggcaacttttt
tgtgtggcaaatacacatgtgaacgttcaacaagatctaaaggatgtcaaactatgggag
gttcatactctattaaaaggtttggaaaagatagctgcaagtgctgatataccaatgtta
gtttgtggcgattttaactcggttcctggaagtgctcctcatgcgcttttagcaatcggt
aaagttgacccgatccatccagatttagcggttgaccctcttggaattcttcgacccgcc
actaaattgacccacgctctacccttggtgagtgcatactcgtcttttgcaagaattgga
ggtggtctcggttatgaacaacaaaagagtagagtggaccccgctacaaacgaaccgtta
tttacaaattgcacacgggatttcattggtaccctcgattacatattttactcggcggac
agtttgagtgtggaatctttattggagcttttggatgaagatagtttaaggaaagatacc
gcgcttccttcaccagaatggtcttctgatcacatcgcattaatggctgaatttcgttgc
aaaccgagaactagacgttaa
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