Bidens hawaiensis: 143532140
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Entry
143532140 CDS
T11418
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143532140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhw03041
]
143532140
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143532140
Spliceosome [BR:
bhw03041
]
Complex C
Other components
Step II factors
143532140
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
RRM_DEAH11
Helicase_C
IBR
DEAD
OB_NTP_bind
AAA_22
IBR_1
Rcat_RNF216
AAA_19
KH_SLS1_1
zf-C3HC4_2
HA2_C
zf-C3HC4
zf-RING_2
RRM_1
zf-RING_UBOX
ABC_tran
AAA_29
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
143532140
NCBI-ProteinID:
XP_076883386
LinkDB
All DBs
Position
Unknown
AA seq
1738 aa
AA seq
DB search
MPTDQTQTQTQTQTLASMHRNKPSIPSNHRSFDHPNHHRRRDRPLPPPPSSAAARRRPNF
VIELRSTSTDQNTYNRHEIVSLMGKFKFAPDEFFLYQTGIVAARFFYQQWPGVLNTVVYL
WEVLLDGGLSFMPKLVQNLLVPSDTEELNSRLRVLFTSRVLGFLAGESVRKLEDKLDEVS
REINRIELLLRKPKPLALHVELASQKEGIVRESELIRKRIDEFSSAMQCVLDYLDGKVCD
DDSEVKVLLLKGGLNWSKVYWMIKRELKRLEDGLPIYADRKDILWKIHCQQVMVLIGETG
SGKSTQLVQFLIDSGVAGDRSIVCTQPRKLAAISLANRVKEESRGCCDDNSIVCSSTFSS
VNRLDSKAIFMTDHCLLQHYMNDKNFSWASCIIVDEAHERSLSTDLLLALIKDLLHRRSD
LRFIIMSATADADQLAKYFFDCDTHHVVGRTFPVDIRYVPEMTSSSNVTYDFMPSYVSHV
LRRVGEIHKNEEHGAILAFLTSQMEVEWACDQFKSSSAICLPLHGKLSHEEQYRVYFNYP
KKRKVIFSTNLAETSLTIPGVKYVVDSGMVKENRFEPGTGMNVLKVGRISQSSANQRAGR
AGRTEPGKCYRVYEEREFQSMPCHQEPEIRRVNLGIAVLRILALGIHKVEEFDFIDAPSN
ASIETAIKSLIQLGAVVLEHGIHKLTNDGRMLVKLGIEPRLGKVILKCFENRMGREGLVL
AALMANSSSIFCRVGREEEKHKSDCLKVQFCHPGGDLFTLLSVYRKWELVPRDKRNQWCW
DNSINAKSMRRCQEAVQEMESCLQHELNIIIPTYWRWDPMVITESDQVLKDVILSALADN
IAMYSGNDNLGYEIPSSGTHFQLHRSCSLLMFGERPSWVVFGEIIAMPHQYLVCVTSFDF
NSLLTLSPAPFDIAQIDRRKLQLNVLTGFGATLLKRFCGKSNLSLKRLVSSIKDTINDDR
VRLEVSVDHNEVNVFATSEHMTRVCEIVKSVLEREEKWLENECIEKCLFPDRHVSPPVAL
FGSGADIKHLELDKRCLTVDIFVRGSDIEEKELLSFLEEHTCGNICAVHKLNLVGQDNEK
WGRVTFFTPEAAEKAVKLTPVDFNGCKLKVAPSSRSIFGGDNKLSFPAVKAKVSWPRKQN
RGFAFVQCNPEDVSALFEDFSHMFIRDQFINCRPSMKFNDSVMVSGFAADVFEPELYDAL
YNSTNRKILKVSLPRAPPVENPPVAALEDALLREVRSFMPGSKNECVRVHIFPCEPLDYV
MKAEISFDGSLHLEAAKALEQIDGKALPGCQPWQKIKCQQQFNSIVSCPASVYGVIKDQL
RSLLDNLQLRKGAEFFTDWNDNGTYRVRISAKATKIMAESRRPLEQLMNGRTLTDEQLTP
PVIQLIFSREGFGLQKSIQRETGTFFLFDRHNQTFRVFGPLHKLDLAQNKLVQSLVALHE
KKQLDVYLRGPTLPPDFMKKVVENFGPDLHGLKERFPGSDLTLNTRHHIISVRGSKELKQ
NVEQTINEILRNTDSTSGQSQAVENQTRSCPICLCDVEDGYRLERCNHEFCRSCLVEQLE
SAIKNSGNSFPIRCAHEGCGKLILVVDIKALLLNDKIDELFQASLGSFVGSSLGKYRFCP
SPDCPSVYQVSDDDSRPFACGACSVETCTRCHVEYHQGSTCEEYDEYKRDPDLSLKDWMK
GKEEVRNCPVCTFTIEKIDGCNHIECRCGSHICWVCLENFKSSDECYAHLRSIHHAIV
NT seq
5217 nt
NT seq
+upstream
nt +downstream
nt
atgcccactgatcaaacccaaacccaaacccaaacccaaaccctagcttcgatgcaccgt
aacaaaccttcgattccgtccaaccaccgttcattcgaccaccccaaccaccaccgccgt
cgcgatcgacctctaccaccgccgccgtcgtccgccgccgctcgccgtcgccccaatttt
gttatcgaactccgttccaccagcaccgaccagaacacatacaaccggcatgagattgtc
agcctcatgggcaaattcaagttcgctccggacgaattcttcttataccagaccggaatc
gttgccgctaggtttttttaccagcagtggcccggtgtgttgaacactgttgtctattta
tgggaggttttgctcgacggaggcttatcgttcatgccgaagcttgtgcagaaccttttg
gtgccgtctgataccgaggagttgaattctcggcttagggttttgtttacttcgagggtt
ttagggtttttggctggggagagtgtgaggaagctggaggataagttggatgaggtttcg
cgcgagattaatcggattgaattgttgttgaggaagccgaaaccgttggcgctgcacgtg
gagttggcgagtcagaaggaagggattgttcgtgagagcgagttgatcaggaagaggatt
gatgagtttagttctgcaatgcagtgtgtgcttgattatttggatgggaaggtgtgcgat
gatgattcggaggttaaggtgttgttgttgaaaggggggttgaattggagtaaggtttat
tggatgattaagagggagttgaagcggcttgaggatgggctgccgatttacgctgaccgg
aaggatattctctggaagatacactgtcagcaggtaatggtattgattggtgaaaccggt
tcaggaaaaagcacccaactggttcaatttcttattgattcaggagtggcgggtgacagg
tcaatagtgtgcacccagccacgtaagcttgctgcaatatcactagcaaacagagtcaaa
gaagaaagtcgtgggtgttgtgatgataattcaatcgtctgttcatcgacattttcatct
gttaaccgtttggattcaaaagctatatttatgacagatcattgtctacttcaacattac
atgaatgacaagaatttttcatgggcatcttgtattattgttgacgaagcacatgaaaga
agcttgtcaaccgatcttttgttagcattaataaaagatttacttcatcgacggtcggat
ttgaggtttattattatgtctgcaacagccgatgcggaccagctggctaaatatttcttt
gattgtgatacacatcatgtggtgggccgaactttcccagttgatattagatatgttcct
gaaatgacatcatcgtctaatgtaacctatgactttatgccatcttatgtttctcatgtt
ttaaggagggtcggtgaaattcataaaaatgaggaacacggggcgattcttgcgtttttg
actagtcaaatggaggttgaatgggcatgtgaccagtttaaaagctcatcggccatttgt
ttaccgttgcacgggaaattatctcatgaagaacagtatcgggtttattttaattatccg
aaaaagcggaaagtaatattctcaactaatcttgcggagacatcgttgactattccggga
gtcaaatatgttgtagactcgggtatggtcaaagagaatcggtttgaacctgggacggga
atgaatgtgcttaaagttggcaggatcagtcaaagctctgctaaccaacgtgcgggtcga
gccggtcgaaccgaaccgggaaagtgttatcgggtatatgaagagagagagttccaatcc
atgccatgtcatcaagaacccgagatccgtagagttaatcttggaattgcggttttgaga
attctagctctcgggattcataaagttgaggagtttgatttcattgatgcaccgtctaat
gcatcgattgagaccgcaattaaaagtttgatccaattgggagcagttgtacttgaacat
gggatccataagctgaccaatgatggtcggatgttggtcaaattggggattgaacctagg
ctcggtaaagtgatattgaagtgttttgaaaaccgtatgggtcgtgaagggctcgtttta
gctgcgctaatggcaaattccagcagcatattttgcagggttggccgagaagaagagaaa
cacaaatcagattgtttgaaagtacagttttgccatccgggtggcgacttatttacatta
ttatctgtttacagaaaatgggagttagttccccgtgataaacggaatcaatggtgttgg
gataacagtattaatgcaaagtctatgagaagatgtcaagaagcggttcaagaaatggaa
agttgtcttcaacatgagcttaatattatcatccccacttattggcggtgggacccgatg
gtgataaccgaatccgatcaagttcttaaagatgtgattctctcagctttggcagataac
attgcaatgtattctggaaatgataatctcggttatgaaatcccgtcatctgggacacat
tttcagttacatcgttcatgttcgttactcatgtttggtgagagaccaagttgggtggtt
tttggggaaattattgcaatgccacatcagtatttggtgtgtgtaacttcctttgacttc
aactctttgttgaccctttctcctgccccatttgatatcgcacagatcgaccggcggaaa
ttgcaattaaacgtgttaacgggtttcggggcaacattgttgaaacgattctgcgggaag
tcgaatttgagcctgaaacgtcttgtttcaagcattaaggataccattaacgatgaccgg
gttcggttagaagtgtctgttgatcataatgaagtcaacgtgtttgctacttctgaacac
atgacacgtgtgtgtgagattgtaaaatctgtattagagcgtgaagaaaagtggctagag
aatgagtgtattgaaaaatgtttgtttccagaccgacatgtgtcacctcctgtggctctt
ttcggttcgggtgctgatataaagcatctggaacttgacaaaagatgtctcacagttgat
atatttgttcgcggttcggatatcgaggagaaagagcttctgtcctttttggaggaacat
acatgtggcaacatctgtgcggtccataagcttaatttggtcggccaagataatgaaaag
tggggccgggtaacatttttcacccctgaagctgctgagaaagctgtaaagttgactccc
gttgacttcaatgggtgtaaattaaaagttgctccttcttctagaagcatatttggaggg
gataacaagttatcatttccagccgtcaaagcgaaagtatcatggccacgtaagcagaac
cggggtttcgcatttgttcaatgtaaccctgaggatgtgtcagcattgtttgaagatttt
tctcacatgtttatcagggaccagtttataaactgtagaccgagtatgaagttcaacgac
agtgttatggtgtcgggatttgctgccgatgtgtttgaacccgagctttatgacgcattg
tacaactcaaccaataggaagattttgaaagttagcttaccgcgggccccacctgtagag
aatcctcccgttgcggctcttgaagatgcacttttgagagaggtgagatcgttcatgcca
ggttcgaagaatgaatgtgttcgtgttcatattttcccatgtgaaccgctggattatgtt
atgaaagccgagattagtttcgacgggagtttgcatttggaggcggcaaaagctttggag
cagattgatgggaaagcgttaccgggttgtcagccgtggcagaagattaaatgccagcag
cagtttaatagcattgtttcttgtcctgcttctgtttatggtgttatcaaggatcaactg
cgttctttacttgataatctccagcttcggaaaggagcggagttctttactgactggaac
gataacggaacgtatcgtgtcagaatatctgccaaggcgacaaaaataatggcggaatca
agaagaccacttgaacagcttatgaatggaagaacattaactgatgaacaactcactccg
ccagttattcaactcatcttttcccgtgaaggatttggtcttcaaaagtcaatccaacgt
gagactggcacgttttttctatttgaccgacataaccaaaccttcagagtttttggcccg
ttacacaagctggatttagcccaaaacaaactggtccagtctcttgtagccctacacgag
aaaaaacagctcgacgtttatcttcgtggtcccactctcccgcctgatttcatgaagaaa
gtggttgaaaacttcggccccgaccttcacgggctcaaagaaagattccccggatccgat
ttaacgttaaacacaagacaccatataatctcggttcgcggcagtaaagaattaaaacaa
aacgttgaacaaacaataaatgagattcttcgcaatacagattccacctcgggtcaaagt
caagctgtcgaaaatcaaacccggtcttgtcccatttgtctttgcgacgttgaagacggt
taccgtttggaaagatgtaaccacgagttctgtcggtcgtgtttggttgaacaattagag
tcggctataaaaaactcaggaaacagtttcccaatccggtgtgcacacgaggggtgcggg
aagttgatattagttgtcgacattaaagcgcttttgttaaatgataagatcgacgagctt
ttccaagcctcactggggtcgtttgtggggtcaagtttaggcaaataccgattctgccct
tcgccagactgtccgtcggtttaccaggtgtcggatgatgattcaagaccgtttgcgtgc
ggggcgtgttcggtggagacgtgtacgcgatgtcacgtggaatatcatcagggatcgaca
tgtgaggagtatgatgagtataagcgggatccggatttgagtctgaaggattggatgaag
gggaaagaggaagttcggaactgtccggtgtgtacgtttacgattgagaagatcgacggg
tgcaatcatatcgagtgtcgatgtgggagtcatatttgctgggtttgcctggagaatttt
aagagcagtgatgagtgttatgcgcatttgaggtcaatacatcatgctattgtttag
DBGET
integrated database retrieval system
