Bidens hawaiensis: 143534664
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Entry
143534664 CDS
T11418
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
bhw
Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143534664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhw03041
]
143534664
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
143534664
Spliceosome [BR:
bhw03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
143534664
Complex B
143534664
Complex C
U2 SnRNP specific factors
143534664
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
143534664
NCBI-ProteinID:
XP_076885215
LinkDB
All DBs
Position
Unknown
AA seq
762 aa
AA seq
DB search
MSKRKFGFEGFNINKQSTYTFNHPQPPQRLYVPPTSTSSSRSHDHFEDTDLDNIEYDIDP
ENHTEPPAAPDDGEIDPLDAFMEGIHEEVRAPPPSKPKAEEKYRDDEEDDPMESYLRAKK
DVALTLASDALHAGYNSDEEVYAAAKAVDAGLLEYDSDDNPIVVDKRKIEPIAALDHGSI
DYEPFNKDFYEEKSSVSGMSEQEVAEYRNSLAIRVAGFDVPRPIKTFAEAGFSAELMKAI
AKQAYEKPTSIQCQSLPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELAKEEGPI
GVVCAPTRELAHQIYLEAKKFAKVYGIRVSAVYGGMSKLEQFKELKSGCEIVIATPGRLI
DMLKMKALNMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKIEKL
AREILTDPVRVTVGEIGMANEDITQEVQVLVSDSEKMNWLLEKLPELIDNGDVLVFGSKK
ATVDEIESQLLQKGFKVAALHGDKDQASRMETLQKFKSGTYHVLVATDVAARGLDIKSIK
SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLITHKEARFAGELVNSLIAAGQNVSME
LMDLAMKDGRFRSKRDARKGGGKRAKGRGGGNRGVRGVDFGLGIGYNSEPKAASSTGRSS
AVNSLRSGVMAQFKSSFVAASSNSQNQGLINSNKKMVLPGFVSGGSIGGDVRSPSTTTGS
PSLAHMPAGNAPSQNTGHGSQGSSDRSKDRPRERRRPSGWDR
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcgtaagtttggattcgaaggcttcaacatcaacaaacaatccacctacacc
ttcaaccaccctcaaccaccccaacgcctctacgtcccaccaacatcaacatcctcctct
cgctcccacgaccacttcgaagacaccgacctcgacaacatcgaatacgacatcgacccc
gaaaaccacaccgaaccacccgctgcaccagacgatggcgaaatcgacccgctggacgcc
tttatggaggggattcatgaggaggtgagggccccaccgccttcgaaaccgaaggcggag
gagaagtatagagatgatgaggaggatgatccgatggagagttatttgagagccaagaag
gatgttgcgttgacgttggcgtctgatgctctgcacgccgggtataattcggatgaggag
gtgtatgctgctgccaaggcggtggatgcggggttgttggagtatgattcggatgataat
ccgattgttgttgataagaggaagattgagccgattgccgcgttggatcatggttcgatt
gattacgaaccgtttaataaagatttttatgaagagaaatcatccgtttcaggtatgagt
gagcaagaggttgcggagtatcgaaatagtttggcgattcgtgttgcaggctttgatgtt
ccaaggccgataaagacatttgcagaagctggtttctctgcagagttgatgaaagcgatt
gcgaaacaagcttatgaaaagcctacttcaatacagtgtcaatctttgccgattgtgtta
tccgggagggatattattggcattgcaaaaactggttcaggtaagacggctgcgtttgtt
cttccgatgattgttcatattatggatcaacccgagttggctaaagaggaggggccgata
ggagtagtttgtgcgcctactagagaattagcgcatcaaatatatttagaggcgaagaaa
tttgcaaaagtgtatggtattcgcgtgtctgcggtttatggtgggatgtcgaaacttgag
cagtttaaagaattgaagtcggggtgtgagattgttattgctacacctgggaggttaata
gacatgttgaagatgaaggcgctgaatatgttaagagctacttatttggttcttgatgag
gctgatagaatgtttgatcttggatttgaaccgcagataaggtcaattgtaggtcaaatt
cgtccggatcgccaaacgttgcttttttcagcgacaatgcctagaaaaattgagaagctt
gcaagggaaatacttactgatcctgtgagagttaccgttggtgagattgggatggctaat
gaggatatcactcaagaagttcaagtacttgtttctgattcagagaagatgaattggctg
cttgaaaagcttccagaactgattgataatggtgatgtattggttttcgggtcaaagaag
gcaacggttgatgagatagaaagtcagttattgcaaaaagggtttaaagttgctgcgctt
catggtgataaagatcaggcgtctcgtatggagacattgcaaaagtttaaaagtgggaca
taccatgttcttgttgcaactgatgttgctgcgcgtggtcttgacattaagtcgattaag
tcggtggttaattttgatattgctagagatatggacatgcatgtgcatagaattgggaga
acaggtcgggctggtgataaagatgggactgcttacactcttatcacacataaagaggcc
cgttttgctggagagttggtcaatagcttgattgcagctggtcaaaatgtgtcgatggaa
cttatggaccttgctatgaaggatgggaggtttagatccaagagagacgctagaaaagga
ggtgggaaaagggcaaaaggaaggggaggtggcaatcgaggtgtgcgtggtgtggacttt
ggcttggggataggatacaattcagaacccaaagctgcctcatcaaccggtcgtagttca
gctgttaattcacttagatcgggagttatggctcagttcaaaagcagctttgttgcagct
tcgtcgaattctcaaaatcaaggtctaattaacagtaacaagaaaatggttttacccggt
tttgtttcgggtggttccataggtggagatgtacgttctccctctacgaccaccggttct
ccaagtttggctcacatgccagctggcaacgctcctagtcagaacacaggacatggaagc
caagggagctctgatagatcaaaagaccgtcctagagaaaggaggcggccttctggatgg
gaccgatga
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