Bidens hawaiensis: 143535443
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Entry
143535443 CDS
T11418
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03013
Nucleocytoplasmic transport
bhw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
143535443
03015 mRNA surveillance pathway
143535443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143535443
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
143535443
5.6.2.5 RNA 5'-3' helicase
143535443
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
143535443
mRNA cycle factors
Common to processing body (P body) and stress granule
143535443
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143535443
NCBI-ProteinID:
XP_076885809
LinkDB
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Position
Unknown
AA seq
1258 aa
AA seq
DB search
MDSQPPNLYDTASQPDTGHDDAYTFLEFNTQDDDDFDYPEFHQLSQPNAAVRSSPSSSAW
PTPLDSISVDNTNASVLDHHSDTNASPVSAKAARGNNNNQASAVDALAAGMSGLNFEETG
DDDGYEYSKGDFMEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAK
HKEVCLHKDSPLGETILECYNCGCRNVFILGFISAKTESVVVLLCREPCLNLNSLKDMNW
DLSQWCPLIDDRCFLQWLVKVPSETEQLRARQISAQQINKVEELWKTNPDATLEDLEKPG
VDDEPQPVAIKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNKKRVAY
FVFPKEDNELRLVPGDELRLRYSGDPAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDL
NHGFSVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHHLLGHEVEMQMVRNALPRRFGA
PGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNV
AVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDE
QGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQSTE
PECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYR
MHPSLSEFPSNNFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTS
YLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKDIEV
ASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQP
LWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKMYNDRRFFFGGGPGIVPNDTFGSTN
PGADRRNSRSRGSYMPPGPPNGAHKPGLHPAGYPMPRVPIPSYHGGPQPYAIPTRGAIHS
PFGGVPHVPPPGNRGFGGGRGHAGHVPHQQGSQQPIGAGMGSSFNFPMENPNSQPSPGGP
LSQPGYVSNMTQGPSQAFRDGFSVGGMSQDFLGDDFKSQGSHVPYNIADLSTQASQGGYG
VDYVTPATQAGFPGSFLNQNSQAGFSRYGAGNDFMSQDYMGHGSQGLFTQVGFKDPSQDD
SSQAHFGADPTSSLQTQGVMNPLYSQPFTHYNSQPMNMPAQQQQQQQTQQGYGSHYKG
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggattcacaaccgcccaatctctacgacacggcgtctcagccggacaccggccacgac
gacgcctacacattcctcgaattcaacactcaagacgatgacgatttcgattaccccgag
tttcaccagctctcgcaacctaacgccgccgttagatcctctccgtcgtcctccgcctgg
cctacgcccttagactccatctccgtcgacaacactaacgcctccgtcctcgatcatcat
tccgataccaacgcctctcctgtttctgccaaagccgctagaggaaataataataatcag
gcgtccgcggttgatgctctagctgcggggatgagcggattgaatttcgaggagacggga
gatgatgacggttacgagtattccaagggagattttatggagcacgcgtgtaggtattgc
ggtgtgcagaatccggcgtgcgtggtgaggtgtaatgtgccgtcgtgcaggaagtggttc
tgtaattcgagagggaatacttcgggttctcacattgttaatcatttggttagagcgaag
cacaaagaagtatgtcttcataaagacagtcctttgggagagacgattctcgaatgttac
aattgtggatgtcgaaatgttttcattctgggatttatttcagcgaagacagagagtgtg
gtggttcttctttgtagggaaccctgcctgaatctaaattccctgaaagacatgaattgg
gatctgagtcaatggtgtccacttattgatgacaggtgtttcttgcagtggcttgttaag
gttccatctgaaacagaacagctgcgggcccgccagatcagtgctcagcaaatcaacaag
gttgaagaactatggaagacgaaccctgatgcaactttggaagatcttgagaagcccggt
gtagatgatgagcctcaacctgtagccataaagtatgaagatgcttatcagtaccaaaat
gtttttgctccgcttatcaagcttgaagccgattatgataaaatgatgaaagagtcccaa
agtaaagacaatctcacaattcggtgggatattggtctcaacaagaaacgtgttgcgtat
tttgtttttccaaaggaagacaacgagttacgtcttgtacctggtgatgaattgagactt
cgatactctggggaccccgcacatccagcctggcaatcagttggacatgtgataaagcta
acggcacaagaggaggtagcactcgagcttcgtgcaagtcagggtgttcctgttgacttg
aatcatggctttagtgttgactttgtgtggaaaagcacaagttttgaccgaatgcagggg
gctatgaaaaattttgctgttgatgagacaagtgtcagtggatatatataccatcatctg
ttaggccatgaggtcgagatgcaaatggttcgcaatgcattgcctcgtcgttttggtgca
cctggtcttccagagctcaatgcatctcaagtttttgctgtaaaaagtgttcttcagagg
ccaataagtttgattcaagggccacctgggactggtaaaacagttacttctgctgccctt
gtttatcatatggctaaacaaggtcaaggacaggttttggtgtgcgctccgagcaatgtc
gctgtagaccaacttgcagagaagataagtgccaccggcttaaaggttgtaaggctgtgt
gcaaaatcaagggaagccgtaagttcacctgttgagcacttgacacttcattatcaggtt
cgacatcttgatacgtctgaaaagagtgaacttcacaagcttcagcaattgaaagatgaa
caaggggagttatcaagcagtgatgaaaagaaatataaagcactaaaacgggctacagaa
cgggagatttctcagagtgctgatgtcatctgctgcacatgtgtcggagctggagatcct
cggttggcaaattttagatttcgtcaggtgctaatcgatgaatctactcaatcaaccgag
cctgagtgtcttattccccttgttcttggagcaaaacaggttgttcttgttggtgaccat
tgtcaacttggtccggtcattatgtgcaagaaagccgcacgggctgggttagctcagtct
ttatttgagcgacttgtgcttcttggtgtgaaacctatcagattacaagtacaatatcgt
atgcatccgtcactttcagaattcccgtctaataacttctatgaagggacgctccaaaat
ggagtgacaataaacgaaaggcagtcaaccggcattgactttccttggcccgtgccaaac
cgtcccatgttcttttatgttcagatgggacaagaagaaattagtgctagtgggacatca
tatcttaacaggaccgaggctgcaaatgttgagaaaatagtgaccactttcttaagaagt
ggtgtagttcctagtcagattggggttataacaccatatgaaggtcaacgtgcatacatt
gttaactacatgtcaagaaatggtgcacttagacaacaactttacaaggacattgaggtt
gcgagtgtggattcgttccaagggagggaaaaggattacattattttgtcatgtgtgaga
agtaatgaacatcagggtattggatttttaaatgatccacgcaggcttaatgttgcactt
actcgtgctcgttatggtattgttattcttggtaaccctaaagttcttagcaaacaacca
ttgtggaatgggttactcacacactataaggagcatgaatgtttagtggaaggacctttg
aacaacttgaagcagagtatggttcaatttcagaaaccaaaaaagatgtacaatgaccga
aggtttttctttggtggcgggcctggtattgtaccgaacgacacctttggatcaacaaac
cctggtgctgatagaagaaacagtcgttctagaggttcttacatgccacctggcccacct
aatggggctcataaacctggtctgcatcccgctggatatccaatgccacgcgtgcctatt
ccatcttatcatggtggcccacagccttatgctattccaactcgtggtgcaatacacagt
ccatttggcggtgttcctcatgttccaccaccaggaaaccggggctttggtggcggcagg
gggcatgcgggtcatgttcctcatcaacaaggctcacagcagccgataggtgcaggaatg
gggtctagttttaacttccctatggaaaatccaaatagccagccgtcacccggtggtcca
ttatctcagcctggatatgtttctaatatgactcaaggcccgagtcaggcttttcgtgat
gggttttctgttggtggcatgtcacaggatttcttgggtgatgattttaaaagccaagga
tcacatgttccatataacattgctgatctttccacacaggcttctcaaggcggttatggt
gtggactatgttactccggccacccaagccgggtttcctggtagttttctgaatcagaat
tcccaagctggattttctcgttatggtgctggaaatgatttcatgtctcaggactacatg
ggccatggttcacaaggcttgtttacacaagtcggatttaaagatccatcacaagatgat
tcttcacaggcccacttcggtgctgaccccacctcttcccttcagacacagggtgtgatg
aatcctctatactcccagccattcacgcattacaactcccaaccgatgaacatgccagct
cagcaacaacagcagcagcaaacacaacaggggtacgggtcccactacaagggttaa
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integrated database retrieval system
