Bidens hawaiensis: 143535979
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Entry
143535979 CDS
T11418
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143535979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143535979
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143535979
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
143535979
mRNA degradation factors
3'-5' decay
Ski complex
143535979
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Ski2_N
ResIII
Motif
Other DBs
NCBI-GeneID:
143535979
NCBI-ProteinID:
XP_076886194
LinkDB
All DBs
Position
Unknown
AA seq
1341 aa
AA seq
DB search
MDRIDTVSELPFRVGFTGHTGHLRIEPLPSVQQSSPVNSLPDFILPPAFAKETPESITKF
VEEKYLLPRLDEDEFCAEKSGRQWEFDWFDQAKFDLEPTMPRTIVVPAWELPFRRSSDVK
KWEPASVQVDVSELMVEADNSIGVRISGPPKDFVKGGINNRPFHPGGLDDSQSAGRTFPD
GASNGEWVQELLVGGPAQVVPPTFKQGMKLGDLKGHSCSWTICEDQSLPNSKATPESTLS
VQFDDLFKRAWEDDVTEVPIDGDTSDLQINVIEAGSPRPIISTEAENKPEVSNDSESSVI
DQILSTTGSGGLTKDLDESGGSGQEKSKEAKVWAVTGGSDGIADHFDELVPDMALDFPFE
LDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALVSKHCTRAVYTAPIKTISNQKY
RDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDV
ERGVVWEEVIIMLPRHINFVLLSATVPNTVEFADWIGRTKQKQIRVTGTTKRPVPLEHCL
FYSGEVYKICEQEKFLSQGLRAAKDAHKRKTMTTGVGGSGPLAPPHTQKPNTGFARGKPN
SNKQTGPQNFVGTGRAHQGNNNWGSRVSEKSVWLSLINKLSKTSLLPVVIFCFSKNRCDK
SADNLRETDLTSRSEKSEIRVFCDKAFARLKGSDRNLPQIVRVQGLLHRGIGVHHAGLLP
IVKEVVEMLFCRGVIKILFSTETFAMGVNAPARTVVFDSVRKFDGKEFRQLLAGEYTQMA
GRAGRRGLDKIGSVLVMCRDEIPDESDLKSLITGSATRLESQFRLTYIMIMHLLRVEELK
VEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPIKSIECIKGDQGIEEYYEWYLEAEMYSN
QITEAVLQSSVSQSFLMPGRLVIVKSQSGQDHLLGVILKAPSSVNKQYIVLVLTPSLPST
LQSSDDQQKKSNAGLQILMPKSKRGMDDDYYSSSTARKGSGVVKIKLPHRGTAAGANYEV
RETDTKEFLSICNAKIKIDQVGLLEDDSTAAYSKTVLSLLNQKVDGNKYPPALDPVKDLK
LKDVSLVEAYYKWNSLLQKMSQSKCHNCIKLEEHIKVAREIKKYKDEINTLKYQMSDEAL
QQMPDFQGRIDVLKELGCIDSDLVVEIKGRVACEMNSGEELICTECLFDNQFDDLEPEEA
VALMSAFVFQQRNASEPSLTPRLAKARDWLYNTAIKLGQLQANFKIQIEPEEYARENLKF
GLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKME
VASNAIKRDIVFAASLYITGL
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaattgacaccgtcagtgaattgccgttccgtgtcggattcaccggtcacacc
ggtcatcttcgaatcgaaccattaccttctgttcaacaatcctcacctgttaactcgcta
ccggacttcattctccctcctgcatttgctaaggagacaccggaatcgatcacgaagttt
gttgaagaaaagtatcttcttcctagattggatgaagatgaattttgtgcagaaaaaagt
ggaaggcaatgggagtttgactggtttgaccaagcaaaatttgacttagagccgacaatg
ccacgcacgattgtggtgcctgcgtgggagttaccttttagacgttcgtcggacgttaag
aaatgggaacctgcatccgtgcaggttgatgtgtctgaactaatggtagaagcagataat
tcaattggtgtgcggattagcggacctccaaaggattttgtgaagggaggcattaacaac
cgcccgtttcatcctggtggtttggatgattctcaatccgcaggaaggacgtttcctgat
ggtgcttcaaatggcgaatgggtacaagaactccttgttggtggtcccgctcaagtcgtc
cctcctacctttaaacaaggaatgaagctcggagacctcaagggtcattcgtgttcctgg
accatttgtgaagatcaaagcttgcctaactccaaggcaacacccgagagtactttatct
gttcagtttgatgatttatttaaaagagcttgggaagatgatgttacagaagtacctatc
gatggagatacatccgatctacaaattaatgtaatcgaggcgggttccccaaggcccatt
atatctacagaagctgaaaacaagccagaagtttcaaatgactctgaatcatctgttata
gatcagattctgtcaacaactggatctggaggattgactaaagatttggatgagtcgggt
ggcagtggtcaagaaaagtcaaaggaggcaaaagtctgggctgttaccggaggtagtgat
ggaattgcagatcattttgatgaactagttcctgacatggcattagatttcccttttgaa
ctagatgcattccaaaaagaggctatatattatcttgagaaaggggaatcagtgtttgtg
gcagctcatacatcagcaggaaagacagttgttgcagagtatgcatttgcactagtatct
aaacattgcacacgagctgtttatactgctcccataaaaacaatcagcaaccaaaagtat
agggacttctcaggaaaatttgatgttgggcttctcacgggggatgttagcttgaggccc
gaggcttcatgcctcatcatgacaactgagattttaaggtcaatgctttatagaggcgct
gacatcatacgtgatattgaatgggttatatttgatgaagtacattatgttaatgatgtt
gaaagaggtgttgtttgggaagaggttatcataatgctcccaaggcatatcaatttcgtt
ctcctctccgccacggtacctaatacagttgaatttgctgattggattggtaggacaaaa
caaaagcaaatccgtgtaactgggacgacaaaaaggcctgtcccattagagcactgtctt
ttttattctggagaagtgtacaaaatctgtgaacaggagaaatttttatcacagggatta
agagctgctaaagatgcccataagagaaaaactatgaccacaggtgtcggtggttcagga
ccacttgcgccacctcacactcaaaaacccaacactggtttcgcgaggggcaaaccgaac
tcaaacaaacaaaccgggccccaaaactttgttggtacaggtcgggcccaccaaggaaat
aacaattggggctcgagagtttctgaaaaatccgtgtggttgtctctaattaataagttg
tcaaagacgtcccttttacctgtggtgatattttgtttctcaaagaatcgttgtgacaaa
tcagctgataatctgcgtgaaactgacctaacaagtcgatctgaaaaaagcgagattcgt
gttttctgcgacaaggcatttgctcggttaaagggatctgataggaaccttccgcagatt
gtgagagtccaaggtcttcttcacagagggattggtgtacatcatgctggtttactccca
atagtcaaagaagtagttgaaatgcttttctgtcgtggtgttattaagattttattttca
accgagacatttgcaatgggagttaacgcaccagctagaacagttgtatttgatagtgta
aggaaatttgatggaaaagaatttagacagttgttagcaggagaatacacacaaatggcg
gggcgtgctggtaggagaggacttgataagattgggagtgttcttgtgatgtgtcgggat
gagattccagatgaatctgatttgaagagtcttataactggaagtgcaaccaggcttgaa
tctcagtttcgtttaacctatatcatgattatgcatctacttcgtgttgaagaattaaag
gtggaggacatgctgaaaagaagttttgctgaatttcatgctcagaaaaaactaccagag
caacagcaattgctgatgcgaaagcttgctcagcctatcaaatctattgagtgcataaaa
ggtgatcagggaatagaggaatactacgagtggtacttggaggctgagatgtatagcaac
caaattaccgaggcagttttgcagtcttcagtttctcagtcttttcttatgccaggaaga
cttgtcattgtcaaatcccaatctggccaggaccacttactcggggtgatcttaaaagca
ccctcttcggttaacaaacagtatattgttctggtgcttacaccatctttaccatcaaca
ttacaaagcagtgatgaccaacaaaagaaatcaaatgctggtcttcaaatattaatgcca
aaatcgaaacgtggtatggatgatgattattactcttcttccactgctcgaaagggatct
ggtgttgttaaaattaaactgccccatcgtggcactgctgctggtgctaattatgaagtc
agagaaaccgacactaaagaattcttgtccatttgcaatgccaaaatcaagatcgatcaa
gttgggcttctagaagatgacagcacagcagcttattctaaaaccgttcttagtttgtta
aatcaaaaggttgatggaaataagtaccctccagcccttgatccagttaaagatttgaag
ctgaaagatgtgagtttagtggaagcatactacaaatggaacagtttattacaaaaaatg
tcacaaagcaagtgccataattgcattaagttggaagaacacatcaaagtagctagggag
ataaaaaagtataaagatgaaattaacacactcaaatatcagatgtcggatgaagccctt
caacagatgcctgattttcagggtcgtattgatgtgttgaaggagctcgggtgtatagat
agtgatcttgtggttgagattaaagggagagttgcttgtgagatgaattcaggtgaagag
ttgatatgtacagaatgcttatttgataatcagtttgatgatttggaaccagaagaagcc
gtggctttgatgtcggcttttgtgtttcagcagaggaatgcttctgagccttcacttact
cccagacttgcaaaagccagagactggttgtacaacactgccatcaaacttgggcagctt
caagcaaatttcaaaatacaaatcgagcccgaggaatatgctcgagagaatctcaagttt
ggacttgttgaggttgtttatgagtgggcaaagggaactccatttgccgatatatgtgaa
ctcacggatgtccctgaagggcttattgtaaggacaatcgtacgattggatgaaacgtgt
cgtgagttcagaaacgctgcagctatcatgggcaactcggcgttgtacaagaaaatggaa
gttgcttcaaatgcaatcaaacgtgatattgtttttgcagctagcttgtacattactggc
ttgtaa
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