Bidens hawaiensis: 143539056
Help
Entry
143539056 CDS
T11418
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143539056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143539056
03041 Spliceosome [BR:
bhw03041
]
143539056
03009 Ribosome biogenesis [BR:
bhw03009
]
143539056
03016 Transfer RNA biogenesis [BR:
bhw03016
]
143539056
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143539056
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
143539056
Spliceosome [BR:
bhw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
143539056
Complex C
U4/U6.U5 tri-SnRNP related factors
143539056
Ribosome biogenesis [BR:
bhw03009
]
Eukaryotic type
Pre-60S particles
Helicases
143539056
Transfer RNA biogenesis [BR:
bhw03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
143539056
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
Motif
Other DBs
NCBI-GeneID:
143539056
NCBI-ProteinID:
XP_076888591
LinkDB
All DBs
Position
Unknown
AA seq
1041 aa
AA seq
DB search
MKVFVCVHSFIKQTDISEFSAEWFCLQPYNLHITIEIEVEFEFAPGLVKQGMDNDNNNTS
SEKRKLPEETETETDNHESMSKKPRVEARTCVHEVAVPKGYTATKDETIHGTLSDPVYTG
TMAKTYPFTLDPFQQISVSCLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP
LKALSNQKYRELHQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVI
FDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHKQPCHVVYTD
FRPTPLQHYAFPMGGSGLYLVVDENEQFREDNFVKLHDTFIKQRLIGMNSKPSGRIAKAG
NAFGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMAKLDFNSQEEKVIVEQVFKN
AIMCLSEEDRSLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEGLVKALFATETFA
MGLNMPAKTVVFTSVRKWDGDSHRYVGSGEYIQMSGRAGRRGKDERGICIIMIDEQVEMN
TLKDMVLGKPAPLVSTFRLSYYSILNLLRRAEGQFTAEHVIRNSFHQFQYEKTLPDIGKK
VAELEEEATKLDASGEIDVAEYHKLKLEISELEKKMMAEITKPERALYFLLPGRLVKVRE
GGTDWGWGVVVNVVKKPAPPLGSLSPTSRGSSYIVDTLLHCSIGSSESGSRPRPCPPRSG
QKGEMHVVPVQLPLISGLSKLRISVPSDLRPIEARQNILLAVQELEKRFPQGLPKLNPVK
DMGIEEPEFVDLVNQIEKIEEQLLSHPLNKSQDENQIQCFKRKAEINHEIQQLKTKIRDS
QLQKFRDELKNRSRVLKKLGHIDAEGIVQVKGRAACLIDTGDELLVTELMFNGTFNDLDH
HQIAALASCFIPGDKSTEQIHLRSELAKPLKQLQDSACRIAEIQHDCKLEVNVDEYVEAA
VRPFLMDVIYCWSKGSSFSEVIQMTDIFEGSIIRLARRLDEFLNQLRAAAHAVGESSLEE
KFGAASESLRHGIMFANSLYL
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtctttgtttgtgttcattcatttattaaacagacggacataagtgaattttcc
gctgaatggttttgtttacagccctacaatctacatattacgatagaaattgaagttgaa
tttgaatttgcaccaggactagttaagcaaggcatggataatgataataataacacaagt
tctgaaaaacggaaattaccagaagaaactgaaacggaaaccgataaccacgaatcaatg
tcaaagaagccgcgtgttgaagcaagaacttgtgttcatgaggtagcagttccaaaggga
tacaccgccactaaagatgaaactatccacgggacattatcagatccggtctataccgga
accatggccaaaacctacccgtttaccctagacccattccaacagatatccgtttcgtgt
ctggaacgaaacgagtcggttttagtatccgcgcacacgtcagcaggcaaaaccgccgtt
gcagagtatgcgatcgcgatggcctttagggacaaacaacgggttatttacacgtctccg
ttaaaggcgttaagcaatcagaaataccgagagttacatcaagagttttctgatgtcggg
ctgatgacgggcgatgtgacgctttctcctaatgcaagttgtttggttatgacgacggag
atattaaggggaatgctttatagagggtctgaggttttgaaagaagtggcatgggttata
tttgatgagattcattatatgaaggatcgggagcgaggggtagtttgggaagagagtata
atatttttgcctccagcgattaagatggtttttttgtctgcaacgatgtcgaatgctact
gagtttgctgagtggatatgtaacatacacaagcagccttgtcatgtggtgtatacggat
tttagacccacgcctttgcagcattatgcgtttcctatgggcgggtccgggttgtatctc
gtggtggatgagaatgagcagtttagagaggataattttgtgaagctgcacgatactttt
ataaagcagagattaattggtatgaatagtaaaccgagtgggaggattgccaaagcagga
aatgcttttggtggatctgatatatataaaattgtcaagatgatcatggaaagaaaattt
caacccgttataatctttagcttcagcagaagagagtgtgagcaacatgcaatgtcaatg
gccaaacttgatttcaatagccaagaagaaaaagtcattgtggagcaggttttcaaaaat
gcaataatgtgccttagtgaggaagatagaagcctcccagcaatcgagctcatgttgcct
ttactgcaacgaggtattgctgttcatcattcaggccttcttcctattatcaaggaactt
gttgaacttttattccaagaagggcttgtgaaagcactatttgccacagaaacgtttgct
atggggttgaacatgcctgcaaaaacagttgtttttactagtgtcaggaaatgggatggt
gatagccatcgttatgtaggatctggtgagtatattcagatgagtgggagagctggacgt
cgtggcaaagatgaacgtggtatatgtattataatgattgatgaacaggtggagatgaat
actctcaaggacatggtgttagggaaaccagctccactggtcagtactttccggttgagt
tactactcgatactgaacttattgagacgggccgaaggccaatttacagccgaacatgtt
atcagaaattcttttcatcagtttcaatacgaaaagacgttacctgatataggaaaaaag
gttgctgagctagaagaggaagcaactaagcttgatgcttccggagagattgatgtggcg
gaatatcataagcttaaactggaaatctctgaactcgagaagaagatgatggcggaaata
acgaagcccgagagagctctatattttcttttacctggtaggctggttaaagttagagaa
ggtggaacagattgggggtggggtgtggttgtgaatgtggttaaaaagccagccccacca
ctcggctcattgtcccctacatcacgtggtagtagctatatagtcgacacgctgcttcat
tgctctattggttcaagtgaaagtggttctcgccctagaccttgtccaccgcgttctggt
caaaagggtgaaatgcatgtggttcctgttcagttgcctctgatatcaggattgagcaaa
ctcagaatatcagttccttcggatctacgtccaatagaagcacgccaaaatatattattg
gcggtacaagagcttgaaaaacgatttcctcaaggtctcccaaaacttaatcctgttaag
gatatgggcatagaagaacctgagtttgttgacttagtcaatcagattgagaaaattgaa
gagcagttgctttctcatccactaaacaagtctcaagatgaaaatcaaatccaatgtttc
aagaggaaagcagaaataaatcatgaaatccaacagttgaaaacaaaaatccgtgattca
cagcttcaaaaattccgcgatgagcttaaaaaccgatcacgggttttaaaaaaacttgga
catatcgatgctgaaggaatagtgcaagtgaagggccgtgcagcgtgtttaattgacact
ggagatgaactcttggtcactgaattaatgtttaacggtacttttaacgatctggatcat
catcaaattgcagctcttgcaagttgctttattcccggtgacaaatcaaccgaacaaata
catttaagatctgaacttgctaaaccgttgaaacaactccaagatagtgcatgtagaata
gcagagatacaacatgactgcaaattggaagttaatgtggatgagtatgtggaggcagca
gttagaccattcttgatggatgtcatatattgttggtcaaaagggtcatctttttctgaa
gttatacaaatgactgatatttttgaggggagtattataagacttgctagaagacttgat
gaatttttaaaccagttacgtgctgcggcacatgctgttggagagtccagtctagaggaa
aagtttggtgccgccagtgaaagtcttcggcacggtataatgtttgcaaattctctatat
ttgtaa
DBGET
integrated database retrieval system
