Bidens hawaiensis: 143545750
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Entry
143545750 CDS
T11418
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like isoform X1
KO
K14409
protein SMG7
Organism
bhw Bidens hawaiensis
Pathway
bhw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143545750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143545750
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
143545750
mRNA cycle factors
Common to processing body (P body) and stress granule
143545750
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Germane
Motif
Other DBs
NCBI-GeneID:
143545750
NCBI-ProteinID:
XP_076893692
LinkDB
All DBs
Position
Unknown
AA seq
829 aa
AA seq
DB search
MTIPMNNTLSNSSRGRAQLLYNKNAELEINRRKAAQAKVTSDPKAWQQMRENYESILLED
HAFSERNDIEYALWQLHYKRIEELRAHYNSAQASAPQNAKGPSRPGPDRITKIRSQFKTF
LSEATGFYHDLMENIRAKYGLSLGYVSDDSQNDKDGSKSIDVKKGLLSCHRCLIYLGDLA
RYKGLYVEGDSKARDFAAASSYYMQAATLWPSSGNPHHQLAILASYSGDELLAVYRYFRS
LAIETPFITARDNLIIAFEKNRQSYCQLLGDSKPIPTKKLPARMNGKGRNRGETRVSMKD
RKTEPRLPLEKDITVPETLKAFSIRFVRLNGILFTRTSLETFEEVFSKTQTDFIRLLSSG
PDEVVNFGSDLNECKLFITRVISIMIFTVYNANKETVNQSYTEILQRSVVLQNAFTAVFD
LMALIVDRCFQLKDPFGSFLLPGIMVFIQWLAYSEDNVVVIKEADEKQAAARSLFWNNLV
LFLNKMLSSSGSHHNEICFPLPEDIELRGFLPLVPGQLILDFSRTNDGNKEKNARVQRIV
ATAKAIATKVKLGQQGIYFDSKSNKFFYAFKPRAEISEELEDEDEIIVFKPSVPKKQIDE
TSKGIVSSSTSSLTSYGGFGYGFPSDQFAQPNTSKPTVGMEDINNGFSNLDLFNEQDHDT
MIPSKFDSVMTSASGLDSIPSKTKFNKSPVGRPMRHFGPPPGFNTPKPTNENPVLDDYSW
LDGYQLPYAGSYINNEFGNSFDCLPQPTKLLNTSKTSLGMDCFPFPGKQVSTTGPANIGV
GNGNGWVDYQLPEHSSVYQEPVKMGNNEQFLAVPQQYQGQSMWDGRFFV
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgaccattccaatgaataacactttaagcaattcatcaagggggcgtgctcaacttctt
tacaacaagaatgctgagctggaaattaatcgtcgaaaagcagcacaagccaaagtcaca
tcagacccaaaagcatggcaacaaatgcgagagaattatgagtcaattcttctagaagac
catgctttctctgaaagaaatgacatcgagtatgctttatggcagttacattacaaacgt
atcgaagagttacgggcacactacaactctgctcaagcttctgcaccacaaaatgctaaa
ggcccttcccgacctgggcccgaccgaatcaccaaaatacgttcccaatttaagaccttt
ttatcggaagctactggattttatcatgatttgatggagaacattagggcaaaatatggg
ttatctctaggttacgtgtcagatgattcacaaaatgataaagacggaagtaaatctatt
gatgttaaaaaaggtctattatcatgccatcgatgtcttatatacttgggggatcttgct
cgttataaagggttgtatgttgaaggagactcaaaagctagggattttgctgcagcatca
agttactatatgcaagctgctactctttggccttccagtgggaatccacatcatcagctt
gctatcctggcttcatattctggagatgaacttttggctgtttaccgttattttcgaagt
ttagcaattgaaactccgttcattactgcgagagacaatttgatcattgcgtttgagaag
aatcgtcaaagttactgtcagctgcttggggattcaaaacctattcccaccaaaaagtta
cctgcacgaatgaacgggaaaggcagaaacagaggtgaaacacgggtttctatgaaggat
agaaaaactgaaccacgtctacctctggaaaaagacattactgtccctgaaactcttaaa
gctttcagcatccgctttgtcagattaaatggcattctttttactcgcacaagcttagag
acttttgaggaagtgttttctaaaacacagactgatttcattcgcctactatcttccggg
ccagacgaggtggtcaactttgggtcagatttaaatgagtgtaaactcttcataacccgg
gtcatatcaatcatgatattcacagtctacaatgcaaataaagaaaccgtaaaccagtca
tacacagagattctacaacgttctgttgtgcttcaaaatgcattcactgccgtatttgat
ctcatggcactcatagttgacagatgcttccaactaaaagatcctttcggaagcttctta
cttcccggcatcatggttttcattcaatggctagcttattctgaggacaatgttgttgtc
attaaagaagcggatgaaaagcaagcagcagctagatccctcttttggaacaacctcgtt
ttgtttcttaacaagatgttatcatcgagtgggtcccaccacaatgaaatatgttttcca
ttgcctgaagatatcgagttaagagggtttcttcctctcgtccccggtcaactcatttta
gatttttctagaacaaatgatggaaataaagaaaagaacgcgcgagtgcagcggattgtg
gccacagcgaaggctattgctacaaaagtcaaacttggtcaacaaggaatctattttgac
tccaagtcaaataagtttttctatgctttcaagccacgtgctgaaattagtgaagaactt
gaagatgaagatgagattatcgtcttcaaaccttccgtacccaagaagcaaatcgatgaa
acatcaaagggtattgtctccagttccaccagttctttaacctcatatggtggttttggt
tatggttttccttcagaccaatttgcacaaccaaacacatcaaagccaacagtgggaatg
gaagatatcaacaatggtttttcaaatcttgacttatttaacgaacaagatcatgatact
atgataccatcaaagtttgactcagtgatgacatcagcatctggtttagacagcattcct
tcaaagacaaagtttaataagagtccagtgggtcgacccatgaggcactttggtccgcca
cctggcttcaacactccaaaacccacaaatgaaaatccggttttggatgattacagttgg
ctagacgggtatcagttaccttatgcaggatcatatatcaacaatgaatttggtaattct
tttgattgtctgccacaaccaaccaagcttttgaacacaagcaagacttctttgggaatg
gattgctttccgttcccgggtaaacaggtttccactaccgggcccgccaacatcggagtt
ggaaacggaaatggatgggttgattatcaacttccggaacattctagtgtttaccaagaa
ccagttaaaatgggtaataatgaacagtttcttgcagtgcctcaacaatatcaaggacaa
tcgatgtgggatggtcgtttctttgtgtga
DBGET
integrated database retrieval system
