Bidens hawaiensis: 143546715
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Entry
143546715 CDS
T11418
Name
(RefSeq) uncharacterized protein LOC143546715 isoform X1
KO
K06100
symplekin
Organism
bhw Bidens hawaiensis
Pathway
bhw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143546715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhw03021
]
143546715
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143546715
Transcription machinery [BR:
bhw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
143546715
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
143546715
U7-dependent histone pre-mRNA processing factors
143546715
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Symplekin_C
HEAT_2
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
143546715
NCBI-ProteinID:
XP_076894435
LinkDB
All DBs
Position
Unknown
AA seq
1094 aa
AA seq
DB search
MAVSQRDQTLSLLAAANNHGDLAVKLSSLKQAKDILLAADLSLLSAELFPYLVELQSSHE
PLVRKTLVETIEEISLKTMEYSPVLMPVLLTLLNDDDSVVARQTIVAGTHIFCKALDELA
LQFQRHGLVERWLEEIWSWMIKFKDTVFQIALEAKSVGPRLLAIKFMETCVLLFMPDNDS
RGKITEVGRNAHMFNIIRVAGGHPVLDSVALQSEANRCFLVLLDLLSSSGGLPGSITISV
VNSLAIIGRRRQALYSSVLFALLDFDASFVVKGTHNPSIQYSLRSAFLGFLRSTHPVLME
SRDKLIKALRAINAGDAADQVMRQVDKMIRNNERASRANKDEQQPSHMLKRSTPMDQEHT
VSSDSASKRSRYGSGFNTNANTAIQSDSRHDYSVNRGPPTKGPSQDNGLTPVEQIISAIG
ALLAEGERGAQSLEILISQIHPELLAEIVVTNMKHLPKNPPSLTKISTRQSGLSNTSQVS
PTVQNSVLTNAVSTSLSATINLQTDPKRDSRRDPRRHDPRRVTPPAGTQSEHFVEDVTES
EADVSALINKQPMPPVLPGIEYSLDILPPKVETETHIPDNSTVFQEQAPDEVKADMEFDI
PNIDSVNKESNTQKSNAQNSMDVDMADDDLPIPLVEDDQLSPSPVGTPVLEETSVELPVV
PSYVELTEQQQKDIKNLAITRIIDSYKQLSGSEFMQTRMSLLSRLVAQVDADDDVIVLIQ
KHIVSDYQNQKGHELVMHVLYHLHALTMSDTSQDSSVAFVYEKFLLGVAKCLLDVLPAND
KSFSKLFCEAPVLPGSAFKLLDEICCSDNNYGKDIRDGDRVHQGLGSLWSLILGRPNNRQ
AFLDIALKCAVHPKDDIRAKAIRLVANKLYVIDFISEKIEEFATNKLLSAVNRSVSDAEL
ANEQQTGQEASISGSQISEPGTSENESATGPQSDSQSDSSMSLAQAQQHLSLFFALCTKK
PSLLQLVFDRYDHAPKAVKQAIHRHVPILVRALGPSYSYLLKIISDPPQGSENLLTQVLH
VLCEGTTPSPDLVAIVKRLYETKLNDATILIPILNSFTKSEVLPIFPRLVQLPLDKFQTA
MAHILQVSLIWVLH
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgtcacagagagaccagacgctctcgctcctcgccgccgcaaacaatcacgga
gatttggccgtgaagctttcgtctttgaagcaagccaaggatatcttactcgctgcggat
ctatcgctgctttccgccgaattgtttccgtatttggttgagcttcaatcgtctcatgaa
ccgcttgttcgcaaaaccctagtcgagacgattgaggaaatcagtttaaaaacaatggag
tattcaccagtactgatgccggtgttgttgacactactgaatgatgatgattctgttgtt
gctagacaaaccattgttgctggcacacatatattttgtaaggctttggacgagttagca
ttgcagtttcagcggcatggtttagtggagagatggcttgaagaaatctggtcttggatg
atcaagtttaaggacactgtcttccagattgcattagaggctaagtctgttgggccaagg
ttgcttgctataaagtttatggaaacttgtgtgttactcttcatgcctgacaatgattct
agagggaaaattacagaagtgggtagaaatgcacacatgtttaatattatacgggtggct
ggtggtcatcctgttctggattcagttgcactccagtctgaagctaatagatgcttcttg
gttttacttgacctcttgagttcgtctggtggtctcccgggttccattacaatttctgtt
gttaatagccttgctatcataggtcgaaggaggcaggccctctatagctctgttcttttt
gcactacttgattttgatgctagtttcgtagtcaaagggacccacaatcctagcatacag
tattctttaagatctgcgttcttaggatttttgcgatctacacaccctgttcttatggag
tcgagagacaaactgatcaaggctttgagggcaatcaatgctggagatgcagctgaccag
gtgatgaggcaagttgacaaaatgataagaaataacgagcgggcttctcgtgcaaacaag
gacgagcaacagccaagtcacatgcttaaacgatcaacccctatggaccaagagcacaca
gtttccagtgactcagcatcaaagaggagtcgttacggttctggttttaatactaacgca
aacacagcaatccaaagtgattcaagacatgattactcagtaaaccgaggcccccccacc
aaggggccatcacaagataacggtctgacacctgtcgaacaaataatttccgcgattggt
gcgttgcttgctgaaggagaacgaggtgctcagtcacttgagattttgatatctcaaata
caccctgaactactagctgaaatcgttgtcacaaatatgaaacatttgcctaaaaaccct
ccatcgttaacaaagattagcaccagacaaagtggtctttcaaacacttcccaggtttca
ccaactgtacagaactccgtgcttacaaatgcagttagcacatccttatctgctacaatt
aacctccaaacagatcccaaacgtgattcccgaagggacccgcggcgtcatgacccacga
cgtgtgacaccgccagctggaacccaatctgagcattttgtggaagatgttacagagtcc
gaggctgatgtgtctgccttgattaataaacaacctatgccacctgtactgccaggtatc
gagtattcattggatattcttccacccaaagtagaaaccgagacacacataccagataat
tcaacagtttttcaagaacaggctccagatgaagttaaagctgacatggagtttgatatc
cctaatattgattctgtcaacaaggaatcaaacacacaaaagtcaaatgcacagaattca
atggatgttgatatggcagatgatgacctgccaattccgttggtggaagatgatcagctt
tcaccaagtccagttggcacaccggtattggaggaaacttctgttgagttacctgtggtt
ccatcttatgtggaattaacagaacaacaacaaaaagatataaagaatttggcaattaca
aggattattgactcttataaacagttaagcggttcagagtttatgcagacccgtatgtca
ttactatctcggctggttgctcaggttgatgctgatgatgatgtaattgtcttgatacaa
aagcatatagtctcagactaccaaaatcaaaagggacacgagctcgttatgcatgtgcta
taccacctgcatgctctcacaatgtcagatacatctcaagattcttcagtggcctttgta
tatgagaaattccttctgggagtggcaaagtgtttgctggatgttttgccagcaaatgat
aaatcgttcagtaaattattttgtgaagctcctgtgttgcctgggtcagcatttaagttg
cttgatgaaatatgttgctcagataataattatggaaaagatatccgtgacggtgatcgt
gtgcatcaaggtcttggttctttgtggagcttgattttaggacgccctaataaccgtcag
gcgtttttggatattgctttgaagtgtgctgttcatccaaaagatgacattcgtgcaaaa
gctattcgactggtggcaaacaaactttatgttattgattttatatcagagaaaattgag
gaatttgctacaaacaagttgctttcagctgttaacagatcagtatcagatgctgagctg
gcaaatgaacagcaaacaggacaagaagcatctattagtggttctcaaatttcagagccc
gggacttctgagaatgagtcagcaacggggccacaatctgattcgcaaagtgattcatca
atgtcacttgctcaagctcagcaacacctttcgttgttttttgctttgtgtaccaagaaa
cctagtcttcttcaacttgtatttgatagatacgatcatgctccaaaggctgttaagcag
gctatccatcgccatgttcctattcttgttcgggccctaggtccatcatattcctattta
ctcaagataatatctgatccaccccaaggaagtgaaaacctcctgacacaggtgctacat
gttctatgtgaaggcacaactccttcgcctgatctggttgcaattgtcaagcggttatat
gaaaccaaacttaacgatgctacaatacttattccaatcttgaattcctttaccaaaagc
gaggttttgcctatttttccgcgtcttgtccagcttccattagacaagtttcagacggct
atggctcatatactacaggtttcactcatatgggtcctgcactaa
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integrated database retrieval system
