Bidens hawaiensis: 143549121
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Entry
143549121 CDS
T11418
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
bhw
Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143549121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhw03041
]
143549121
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
143549121
Spliceosome [BR:
bhw03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
143549121
Complex B
143549121
Complex C
U2 SnRNP specific factors
143549121
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
143549121
NCBI-ProteinID:
XP_076896225
LinkDB
All DBs
Position
Unknown
AA seq
762 aa
AA seq
DB search
MSKRKFGFEGFGINKQSTYSFDQPQPPQRLYVPPSSRSAAHDHFEDTDLDNIEYDDAENS
TEPAAAPGPDDGEIDPLDAFMEGIHQEVRAPPPPKPKAEGKYRDDEEDDPMESYLRAKKD
VALTLASDALHAGYNSDEEVYAAAKAVDAGMLEYDSDDNPVVVDKRKIESIAALDHSSVD
YEPFNKDFYEEKSSISGMSEQEVAEYRKSLAIRVAGFDVPRPIKTFAEAGFSAELMKAIA
KQAYEKPTSIQCQSLPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELAKEEGPIG
VVCAPTRELAHQIYIEAKKFAKVYGIRVSAVYGGMSKLEQFKELKSGCEIVIATPGRLID
MLKMKALNMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKIEKLA
REILTDPVRVTVGEIGMANEDITQEVQVLVSDFEKLNWLLEKLPELIDNGDVLVFGSKKA
TVDEIESQLLQKGFKVAALHGDKDQASRMETLQKFKSGIYHVLVATDVAARGLDIKSIKS
VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLITHKEARFAGELVNSLIAASQIVSMEL
MDLAMKDGRFRSKRDARKGGGKRAKGRGGGNRGVRGVDFGLGIGYSSEPKAASSTGRSSA
VNSLRSGVMAQFKSSFVAASSNSQNQGLINSNKKMALPGFVSGGSIGGDVRPPSTTATSS
PSLTHMPAGNTPSQNTGHGSQGSSDRSKDHPRERRRPSGWDR
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcgtaagttcggattcgaaggcttcggcatcaacaaacaatccacctactcc
ttcgaccagcctcaaccaccccaacgcctctacgtccctccgtcctctcgctccgccgcc
cacgaccacttcgaagacacagacctcgacaacatcgaatacgacgatgccgaaaacagc
accgaaccagccgctgcgcccggaccagacgatggcgaaatcgacccgctcgatgcgttt
atggaaggcattcatcaggaggtgagggccccaccgcctccgaaaccgaaggcggagggg
aagtatagagacgacgaggaggatgatccgatggagagttatttgagggcaaagaaggat
gtcgcgttgacgttggcgtctgatgcgctgcacgctgggtataattcggatgaggaggtg
tatgcggcggccaaggcggtcgatgcggggatgttggagtatgattcggatgataatcct
gttgttgttgataagcggaagattgagtcgattgccgcgttggatcatagttcggttgat
tacgaaccgtttaataaagatttttatgaagagaagtcatccatttcaggtatgagtgag
caagaggttgcagagtatcgaaagagtttggcgatacgtgttgcaggctttgatgttcca
aggccaataaagacatttgcagaagcgggattctctgcagagttaatgaaagcaattgcg
aaacaagcttatgagaagcctacttcgatacaatgtcaatctttgccaattgtgttatcc
gggagagatataattggcattgcgaaaactggatcgggtaagactgctgcatttgttctt
cctatgatagttcatattatggatcaaccggaattggctaaagaggaggggccgattgga
gtagtttgtgcgcctactagagaattagcgcaccaaatatatatagaggcgaagaaattt
gcaaaagtgtatggtattcgtgtgtctgcggtttatggcgggatgtcgaagcttgaacag
tttaaagaattgaagtcagggtgtgaaattgttattgctacacctgggaggttaatagac
atgttgaagatgaaggcattgaatatgttaagagctacttatttggttcttgatgaggct
gatagaatgtttgatcttggatttgaaccacaaataaggtcaattgtaggtcaaatacgg
cctgatcgccaaacattgcttttttcagcgacaatgcctagaaaaattgagaagcttgca
agggaaatacttactgatcctgtgagagttaccgttggtgagattgggatggctaatgag
gatataactcaagaagttcaagtacttgtttctgattttgagaagttgaattggctgctt
gaaaagctcccagaactgattgataatggtgatgtattggtttttgggtcaaagaaggca
acagttgatgagatagaaagtcaattattgcaaaaagggtttaaagttgctgcgcttcat
ggtgataaagatcaggcgtctcgtatggagacattgcagaagtttaaaagtggaatatac
catgttcttgttgcaactgatgttgctgcgcgtggtcttgacattaagtcgattaagtcg
gtggttaattttgatattgctagagatatggacatgcatgtgcatagaattgggaggaca
ggtcgggctggtgataaagatgggactgcttacactcttatcacacataaagaggctcgt
tttgctggagagttggtcaacagcttgattgcagctagtcaaattgtgtcaatggaactt
atggaccttgctatgaaggatgggaggtttagatccaagagagacgctagaaaaggaggt
gggaaaagggcaaaaggaaggggaggcggcaatcgaggtgtgcgtggtgtggactttggt
ttggggataggatacagttcagaacccaaagctgcctcatcaactggtcgaagttcagct
gttaattcacttagatcgggagttatggctcagttcaaaagcagctttgttgcagcttca
tccaattctcaaaatcaaggtttaatcaacagtaacaagaaaatggctttacccggtttt
gtttctggtggttccataggcggagatgtacggcctccctctaccaccgccaccagttct
ccaagtttgactcacatgccagctggcaacactcctagtcagaacacaggacatggaagc
caagggagctctgatagatcaaaagaccatcctagagaaaggaggcgaccgtctggatgg
gaccgatga
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