Bidens hawaiensis: 143550217
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Entry
143550217 CDS
T11418
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143550217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143550217
Enzymes [BR:
bhw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
143550217
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
143550217
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143550217
NCBI-ProteinID:
XP_076897026
LinkDB
All DBs
Position
Unknown
AA seq
690 aa
AA seq
DB search
MKQRSMVRAFCKTLTLIPFHRPFWATFSTASSSFAIKNVTKSNFHSSLADLRQHVRDSDF
VSIDLEMTGVTSAPWRESFEFDRFDVRYLKMKDSADKFAVVQFGVCPFRWDPTKQSFIAH
PHNFYIFPRQEIGAYDSSSYEFLCQTSSIDFLAKYQFDFNVCIKDGISYLSRAQEDDVRL
QLQSLNEAEPSESLSTDKEVKDVPLVRMADILFVERMRNKISEWHDDLLQTRSGGPHKAL
EDYNDSADQFQTIFFKTRPAVKLNGFTSRQLRLIKSVLEKSFKDLVYVRVNDGSCFQQII
VYADSKRDLELLMKEVKESHLKEAEKKIEASIGFRHVIDLLSSEQKLIVGHNCFLDIAHI
CRKFVGPLPSSLEEYVPLVQRIFPSIIDTKILLNANNLLQLKMKKSSTSLAKAFAIMCPH
IASGGLSLCSANNNSVAVEVQVDDMRSSNWNSGAKHEAGYDAFMTGCIFAQSCNHLGIDF
TSHSMLIKQDKLQSYINLLYLSWSSGDVVDLKTGQTRTESSAFNTFKIQQPKILFPNVVL
IWGFSSNLKAREIKESLTKVFGLTSVTSIFHLDKTAVFVQFSKSELVSDFLKLKTEIENK
KNGAIYVLHPFSDLLEGGKTGAGCYEVYKEICGSPVSKVLFADQAEAVYNLESRVLGSRA
HKVDSFADSESATDTKMAETNGEVLGLVSC
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaacgatcgatggttagggcgttttgcaaaaccctaaccctgattccgttccac
cgtcctttttgggcaacattctctacggcttcttcaagttttgctatcaagaatgtcacc
aaatccaactttcattcctctttggctgaccttcgccagcatgtcagagactctgatttt
gtctcaattgacctggaaatgacaggcgtcacgagcgccccgtggagggagtcttttgag
tttgacagatttgacgttcgctacctcaaaatgaaggactctgctgacaagtttgctgtt
gttcaatttggtgtttgcccctttaggtgggacccaaccaaacagtcgtttatcgcccac
ccacacaacttttatatatttccaagacaagaaatcggcgcttatgactcatcatcgtat
gagttcttgtgccaaacttcttcaattgatttcttggcaaagtaccagttcgatttcaat
gtgtgtataaaagatggaatatcatatttatcaagggctcaagaagatgatgttaggtta
cagttacagtcattaaatgaagccgagccatccgagtcattatccacagataaagaagtt
aaagatgttccactggtcagaatggcagatatactttttgtggagagaatgaggaacaag
atcagtgaatggcatgatgacctgttacagaccagaagtggagggccccacaaggccctg
gaagattataatgactcggccgatcagtttcagactattttcttcaagacacgtccagcc
gttaagttgaatggattcacctcccgtcagctaagattaattaagtcggttttagaaaag
agcttcaaagatttagtgtatgttcgtgttaatgatggttcatgttttcaacaaattatt
gtctatgcagactccaaacgggacctagaattgcttatgaaagaggttaaagaaagccat
ttgaaggaagcagaaaagaagattgaagcgtccattggcttccgccatgtcatcgacctt
ctttcctctgaacaaaagttgattgttggacataactgttttcttgatattgcacatata
tgtagaaaatttgtgggtcctcttccttcgagtcttgaagaatatgtaccattagttcaa
agaattttcccatccataattgacacgaaaatcctcctgaatgcaaacaacttattgcaa
ttgaaaatgaagaaaagtagcacgtcactcgctaaagcttttgcaattatgtgtccacat
attgcttctggtggtttaagtctttgttctgctaataataattctgttgcagttgaggtt
caagttgatgatatgaggtcatcaaactggaactcgggagctaaacacgaagctggttat
gatgctttcatgacaggctgtatttttgcccaatcatgcaaccatcttggtattgatttc
acctctcactcaatgttaataaaacaagataagcttcaaagctacatcaaccttctatac
ctcagctggtctagtggcgacgtagttgacttaaaaaccggtcaaacccgaacagaatct
tcagcgttcaacactttcaaaatccaacaaccaaagattctgtttccaaacgttgtactg
atttggggtttttcgtccaatctcaaagcgagggagataaaagaatctttgaccaaagtc
ttcgggctgacttctgtcacatccattttccatttggataaaactgcagtgtttgttcag
tttagcaaatccgaattagtttctgattttttgaaactgaaaacggagatagagaataag
aagaatggtgcgatttatgttttgcacccgttttcagaccttctagaaggtggaaaaaca
ggtgctggttgttatgaggtttataaggagatttgcgggtcacctgtttcaaaagttttg
tttgctgatcaagctgaagctgtctataatttggaatccagagtgttgggaagtagggcc
cacaaagtcgattcttttgctgattcagaatctgcaactgatactaagatggcagaaacc
aatggagaagtactaggtttggtatcttgctga
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