Bidens hawaiensis: 143552196
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Entry
143552196 CDS
T11418
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
bhw Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143552196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhw03041
]
143552196
Spliceosome [BR:
bhw03041
]
Complex B
Other components
Prp19-related factors
143552196
Complex C
143552196
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
RRM_3
RRM_occluded
zf-CCCH_4
zf-CCCH_10
zf-CCCH_PARP12
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
143552196
NCBI-ProteinID:
XP_076898588
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MAHRILRDVEADGWERSDFPIICESCLGDNPYIRMTKANYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDSIPKSDVNREYFAE
EHDRRARAGLDYESSFGKERPNDTILKLQRTTPYYKRNRAHICSFFIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLEPPEDETIRTLYVGGLDARVS
EQDLRDNFYSHGEIQSVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQAPKVDGEPGSDEARQQAVAHSGLLPRAVISQQQNQYQPPGTSASHDQQPPPGMHYFNI
PPPPPQQGRAFYPSMDPQRMGAVIHNQDGSGASGSGGGDQRPPYAAYPPPPRPPPGGGGQ
YYPQYYPTPPYGYGPPTPAYQQYPPPSRPPSMAPNGPNALHGQQAHQQQTPPPPSMPPHG
PNALHGQQAHQQQTPPVAEAGPPPQQ
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggcacataggatactaagagatgttgaggctgatggttgggaacgatctgattttccg
atcatatgcgagtcatgtctaggtgacaatccttatattcgaatgacaaaagcaaattat
gataaggagtgcaagatctgcactaggccgttcacagtttttaggtggagacctggtcgg
gatgcaagatacaagaaaagtgagatttgccaaacttgcagcaaattgaaaaacgtttgt
caagtttgtcttttggatcttgaatacggtttgccagttcaggttcgtgatactgcactc
agtatcgactcaaacgactccattccgaagagtgatgtcaacagggaatattttgcagag
gaacatgatcgtagggcaagagctggtttggattatgagtcatcttttggaaaggaacga
ccgaatgatactattttgaagctgcaacggacaactccatattataagagaaaccgagca
cacatttgcagtttctttattagaggtgaatgtactagaggtgccgagtgtccttacagg
catgagatgcctgtcactggtgaattgtcccaacagaatatcaaagatcgttattatgga
gttaacgatcctgttgcactaaaactactaagcaaagcaggcgaaatgccgtctctagaa
cccccagaagacgaaaccatcagaaccctatacgtaggcgggctcgacgcccgcgtctct
gagcaagatctcagagacaatttctactcccatggtgaaatccagtcagtaaaaatggtt
ctccaacgcgcatgcgctttcgtcacctacaccactcgagaaggtgcagaaaaagctgcc
gaagaactttcaaacaaattagtcatcaaaggccttcggctcaaactaatgtggggccgc
ccacaggcaccaaaagttgatggtgaacccggttcggatgaagcccgacaacaagcggtt
gcacacagtggtttattaccccgtgctgttatttcccagcagcaaaatcagtaccagccg
ccaggaacttccgctagtcatgaccaacaaccgccacctggaatgcattatttcaacatc
ccgcctccgccacctcagcagggcagggcgttttatccttccatggatcctcaacgaatg
ggggcggtgatccataatcaagatgggagtggggctagtgggtcgggtggcggtgatcag
cggccaccatatgctgcttatccgccgccaccgcgtccacctccaggtggtggtggacaa
tactatccgcagtattatccaacaccgccgtacgggtatggtcccccgactccagcttat
caacaataccctccaccgtcacgtccaccgtcaatggcaccaaatggaccgaatgccctc
catggtcaacaggcgcatcaacagcaaacaccaccgccaccctcaatgccaccacatgga
ccgaatgccctccatggtcaacaggcgcatcaacagcaaacaccaccagtggcggaggcg
gggccaccgccacaacaatga
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