Bidens hawaiensis: 143553666
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Entry
143553666 CDS
T11418
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
bhw Bidens hawaiensis
Pathway
bhw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143553666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhw03021
]
143553666
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143553666
Transcription machinery [BR:
bhw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
143553666
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
143553666
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_12
Motif
Other DBs
NCBI-GeneID:
143553666
NCBI-ProteinID:
XP_076899725
LinkDB
All DBs
Position
Unknown
AA seq
673 aa
AA seq
DB search
MEDGEGGLSFDFEGGLDAAPTQPTASVPVIHHHHPSTDNNNPPPPPSSTTDNNPPSSTNF
SGRRSYRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNE
DIKECNMYKLGFCPNGPDCRYRHAKLPGPPPSVEEVLQKIQQLTSYNYGNSNRFFQNRNA
NNSQQSDKFQFQNDANQGAKPSTTDSASMQPVPPLSPRQQQQGSQFVQSQAQSNGQQNQT
NKTSIPLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSV
NRTRHFQGCARMTSKIGGLVGGGNWKSEHGTAHYGRNFCVRWLKLCELSFHKTRHLRNPY
NENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISLAAESKREEEKAKGLNLENAT
ENPDIVPFEDNEEEEEEESEEEDDSYDQGFGMAAQGGRGRGGRGLWPPHMPLGRPPRPMP
GMRGFPPLMNMMGPDGFPYGGVGPDGFPVPDLMNMGPRGFGPFGPRFSGDFQRPPFNNMM
FHGRPGPHGGFTGGGGFGMMMGPGPGRGPFMGPGGRGGRPGFSQQQQQLQASQNTSRSKR
DQAVGSGGDDDTRPVGQNMGGQDDEAQHGGENRLKNGESESEDEAPRRSRHGETKKRRGG
SEGDAATTSGDKI
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaagacggtgaaggcggtctaagcttcgacttcgaaggcggccttgacgccgcccca
acccaacccaccgcctccgttcccgtcatccaccaccaccatccatccaccgacaacaac
aacccaccaccacctccatcctccaccaccgataacaacccgccttcctccaccaatttc
tccggccgcagaagctaccggcaaaccgtatgccgtcactggctccgcagcctctgtatg
aaaggcgaagcctgcggctttcttcatcagtatgataaatcacgcatgcccatttgcaga
ttctttagattgtacggagagtgccgtgaacaggactgtgtttataagcataccaatgaa
gatattaaagagtgtaacatgtacaagttgggattctgtccgaacgggcctgattgtcgg
tacaggcatgccaagcttccgggacctcctccttcagtggaagaggtgctccaaaagatt
cagcagttaacttcttataattatggaaattccaacaggttttttcaaaaccgaaacgcc
aacaactcgcaacaatcggacaaatttcagtttcaaaatgatgcaaatcaaggtgctaaa
cctagcaccacggattctgcttcaatgcagcctgtgccgcctttgtcgccacgtcagcag
caacagggtagccagtttgttcagtcacaagcgcagtcgaatggtcaacaaaatcaaacg
aataagacctcgatacccttgcctcaaggaacatcaaggtattttattgtaaaaagttgc
aaccgtgagaatcttgagttatcggtccaacaaggagtgtgggccacccaaagaagcaac
gaggctaagttaaacgaggcttttgattctgttgaaaatgttattttaatattttctgtc
aacaggacacgccattttcagggctgtgcaagaatgacttctaaaattggtggtttggtt
ggcggtggcaactggaaatctgaacatggaactgcacattatggacggaatttctgtgtg
agatggcttaagctatgtgaactgtccttccataaaactcgacatctgaggaacccttac
aatgagaatttacccgtaaagataagcagagattgtcaagaacttgagccctcagtcggt
gaacaattggcgtctcttttgtatcttgaacccgacagtgaactcatggcgatatcactt
gcagcagagtcaaaacgagaagaagagaaggcgaaaggattaaatttagaaaatgcaacc
gaaaatcccgatattgttccgtttgaggacaatgaagaggaggaagaagaagagagtgag
gaagaagatgacagttatgaccagggttttggcatggcagcacaaggcggtagagggaga
ggcggcagagggttatggccaccacatatgcctttaggaaggcccccccgccccatgcct
ggaatgagaggtttcccccctctcatgaacatgatgggacccgacgggtttccttatggt
ggagttgggcctgacgggttccctgttccggatcttatgaacatgggcccacgtggattc
ggcccattcgggcctagattctcgggtgattttcagcgcccaccgtttaataatatgatg
tttcatggccgtcccgggcctcatgggggttttacagggggtggtggcttcggaatgatg
atgggacctgggcctggacgtggcccgtttatgggcccggggggaagaggtggtcggcct
gggttttcacagcagcaacagcagctacaagcttctcagaatactagtcggagtaagagg
gatcaagcggtaggtagtggcggtgatgatgatactcggcccgtgggccaaaatatgggt
gggcaggatgatgaggcccaacatggtggggagaatagattaaaaaacggtgagagtgaa
agtgaagatgaggcgccgaggagatctagacatggagaaacgaagaagaggcgtggcggc
tctgagggtgatgccgccacaacctccggtgacaagatttaa
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