Bidens hawaiensis: 143555734
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Entry
143555734 CDS
T11418
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143555734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143555734
Enzymes [BR:
bhw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
143555734
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143555734
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143555734
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143555734
NCBI-ProteinID:
XP_076901354
LinkDB
All DBs
Position
Unknown
AA seq
615 aa
AA seq
DB search
MLSVLRVHLPSDIPIVGCELSPYVLVRHPDKTVSTDDVPESSPIEGHFLRYKWYRIQSDK
KVAICSVHPSEQATLQCLGCVKAKIPVAKSYHCTPKCFSDAWQHHRVLHERAASAANENG
NEEEDIYGRFNNTTSGMNNNNSVGNNNNNNNNNNNNNNNNNNNNNNNNNNNNVVNGATPL
YPAAVTQRNSGETWFEVGRSKIYTPTADDIGHVLKFECVVVDSETKLPVGQANTILTSRV
IPAPSPSPRRLISVTNADVAGHLDSSSGTFTVLSYNVLCDSYATSDLYGYCPSWALSWPY
RRQNLLREIVGYLADIVCLQEVQSDHFEEFFAPELDKHGYQALFKRRTTEVFNGSQTIDG
CATFFCRDRFSHVKKYEVEFNKAAQSLTDALVPNAQKKTALNRLVKDNVALIVVLEAKFS
NQGVDNLGKRQLVCVANTHVNVQHDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNS
VPGSAPHALLAIGKVDSMHPDLAVDPLGILQPATKLTHTLPLVSAYSSFARIGYEQQKKR
VDPNTNEPLFTNCTRDFIGTLDYIFYSADSLTVESLLELLDEDSLRKDTALPSPEWSSDH
IALLAEFRCKPRTRR
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgctgagtgtgctcagagtgcacctcccgtccgatattccgattgtgggctgcgagctt
tcgccgtatgtgcttgttcgacatcccgataagaccgtttccactgatgatgttcctgag
tcttcaccaattgaaggacattttttaagatataagtggtatcgcatacagagtgataaa
aaggttgctatttgtagtgtacatccatccgagcaagccactttgcagtgtttagggtgt
gttaaggcgaaaatacctgttgctaaaagctaccactgcactcccaaatgtttttctgac
gcgtggcaacaccatcgcgttttacacgagcgtgctgcaagtgctgcgaatgagaatgga
aatgaagaggaggatatttatggacggtttaataatacgacttctgggatgaataataat
aatagtgttggtaataataataataataataataataataataataataataataataat
aataataataataataataataataataataataatgttgttaatggtgcaactccgtta
tatcctgcagcagttacacaaagaaacagtggtgaaacttggtttgaagtcgggcgttct
aaaatatacacgccaacagcagatgatatcggacatgttcttaagtttgaatgtgttgtg
gtggattcggagacaaagttgcctgttggtcaagcaaacactatattaacgtctcgtgtg
attcctgctccgtcaccgagtccaagacggttgatttcagtcactaatgctgacgtggca
ggacatttggattcatcatcgggcacttttaccgttctttcatataatgtgttatgtgat
tcgtatgccactagtgatttgtatggctattgcccttcgtgggccctctcttggccttat
cgcaggcagaatttgttgagagaaatcgttggttaccttgcagacattgtttgtcttcaa
gaggttcaaagtgaccattttgaagaattctttgcacctgagctggacaaacatggatat
caagctttattcaagaggcgaactactgaggttttcaatggtagtcagacgattgatgga
tgcgctacgtttttttgcagagatagattttcgcatgtgaaaaaatatgaggttgagttt
aataaagctgcacaatctttaactgatgctttggttcctaatgcccagaagaaaacagct
ttaaatcggctggtcaaggataatgtcgccttaattgttgttctcgaagcaaagttcagt
aaccaaggtgttgataatcttgggaaacggcaacttgtttgtgtcgcaaatactcatgtg
aacgtacagcacgacctaaaggacgtgaaactgtggcaggttcacacattgttaaaagga
ttggaaaagatagcagctagtgcagatattccaatgttagtgtgtggtgacttcaattcg
gttccaggaagtgctccacacgcacttctagcaatcggaaaagttgactcgatgcatccg
gatttagctgtagatcctcttggaatcctgcaacccgccaccaaactgactcacactctc
cccttagtaagcgcatactcgtcttttgctagaattggttacgagcaacagaaaaagaga
gtggacccaaatacaaacgaacccttgtttacgaactgcacacgagacttcattggcact
cttgattacatattctattctgccgatagtttgactgtggagtcattgttggagcttttg
gatgaggatagtttgaggaaagatacagcacttccttcgcctgagtggtcatctgaccac
attgcacttttagctgaatttcgttgcaagccacgcactagacgttaa
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