Bidens hawaiensis: 143556785
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Entry
143556785 CDS
T11418
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143556785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143556785
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143556785
mRNA degradation factors
5'-3' decay
Decapping complex
143556785
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
143556785
NCBI-ProteinID:
XP_076902143
LinkDB
All DBs
Position
Unknown
AA seq
608 aa
AA seq
DB search
MDRFGGGGVLNPDPNQHLDSNSSGGALFDASQYAFFGNQVLEEVELGGLEDDGELSEAKF
EEEEFLLEQEEVVFPGINDLSTSFSKFRPPAPALNNRIQNQFGGNLPDLSNGLMQQHFTH
NLQPQQHRMHHQFQPPFGGQLTGLQPLMNHHPPMMNNMEPLGMGSRDMRPNSLARGRPGQ
GPGPGPRYFQSGFDTSGWPQFKSKYMTSSEIENIVRMQLAATHSNDPYVDDYYHQACLAN
KSSGAKLRHHFCPTQLRDCSPQARAANEPHAFLQVDALGRVSFSSIRRPRPLLEVDPPNS
AAGGPTDQKTLDKPLIQEPLLAARVAIEDGVCLLLDVDDIDRFLQFNKLPDGGAQLRQRR
HVLLEGLATSLQLVDLLGKNGQTIDSGSKDDLVFLRLVSLPKGRKLLSSYLKHLEPGSEL
TRVVCMAIFRHLRFIFGSLPVDPQTAETFNNLVSSVSSSVRGMELRSLATCLASVVCSTE
QPPLRPVGSPAGDGASVVLKSVLERGTELLTDPNAAANCSPANRALWQASFDSFFALLTR
YCVSKYEGVVQSFLSKGRDMSVIWSDAAKSISVEMPVELLRASLPHTNEKQKKVLLEFAQ
RSMPVNQP
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggatagattcggaggtggtggagttcttaatccggatcctaatcagcaccttgattcc
aattcatcaggcggtgcgctatttgatgcatcacagtatgcgtttttcggtaatcaagtt
cttgaagaagttgagttgggaggtttggaggatgacggtgagctttcggaagctaagttt
gaggaggaagagtttctgttggagcaagaagaggttgtgtttccaggaatcaacgatctt
tcgacatcattttcaaagtttcgtcctcctgctccagccctcaacaaccggatacaaaac
caatttggtggaaatttgcctgatctttcaaacggtttgatgcaacaacattttactcac
aatttgcagcctcaacaacacaggatgcaccatcagtttcagcctccatttggtggtcaa
ttaaccgggttgcagccactaatgaaccaccatccacctatgatgaacaatatggaaccc
cttgggatgggttcacgagatatgagacccaattcgttggccagaggtagaccgggccag
ggcccaggaccaggcccgagatattttcaatcgggctttgacaccagtggatggccacag
ttcaaatcaaaatacatgacatcatctgagattgagaacattgtcagaatgcaacttgct
gctacacacagtaacgatccatatgtggacgattattatcaccaagcttgcttagccaac
aaatctagtggtgcaaaattaagacaccatttttgcccgacgcagttaagggattgctca
ccccaagcccgtgctgctaatgaaccacacgcgtttcttcaagttgatgctttaggtcgg
gtttctttctcttctatacgccgtccccgcccgcttcttgaagttgacccgccaaattca
gctgctggcgggcccactgaccagaaaacgctggacaaaccattgatacaagaacctctg
cttgcagctagagtcgcaattgaagacggtgtttgtcttcttcttgatgttgatgatatc
gatcgttttctacagttcaataagcttccggatggtggggcccagttaaggcaaaggcga
catgttcttcttgaaggtttagcaacatcacttcaacttgttgacctgttaggcaagaat
ggtcaaacgattgactcaggttcaaaggacgatctcgtctttttacggttggtttctctt
ccaaagggtagaaagcttctctcgagttacctcaaacatcttgaaccgggaagcgagttg
actcgtgtagtttgcatggcaattttccgtcatttaaggtttatatttggatctcttccg
gttgatccacaaacagctgaaacttttaataatcttgtaagtagcgtttcgtcctcagtg
cgcggaatggagcttagatcactggctacctgtctggcatctgtggtttgttctacagag
caaccaccacttcgtcctgttggaagtcctgcaggggacggggcttctgttgtgttaaaa
tctgtactagaaagaggaaccgagcttttaaccgatccaaatgctgcggctaactgcagc
cccgcgaatcgggctttgtggcaggcgtcttttgattccttttttgcgcttctcactaga
tactgtgttagtaaatatgagggtgttgtccagtcatttctgagtaaggggcgtgacatg
tcggttatctggtcagatgctgcaaaatctatcagtgtggaaatgcccgttgagctcttg
cgggccagccttcctcatacgaatgaaaagcagaagaaggtgttattggaatttgctcaa
cggtcgatgcctgttaatcagccataa
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