Bidens hawaiensis: 143556922
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Entry
143556922 CDS
T11418
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bhw Bidens hawaiensis
Pathway
bhw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143556922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhw03021
]
143556922
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143556922
Transcription machinery [BR:
bhw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
143556922
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
143556922
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
143556922
NCBI-ProteinID:
XP_076902247
LinkDB
All DBs
Position
Unknown
AA seq
743 aa
AA seq
DB search
MEMDSSSRGRQFDRSSRDMKKPRLNNNGRPVAVGFRQSAERERDLENSRGGYHPQALSQL
QLQQQHQELVDQYMTALAELTFNSKPIITNLTIIAGENVQAAKAIAAAICTNILEVPSDQ
KLPSLYLLDSIVKNIGRDYIRYFAARLPEVFCKAYKQVDSVVRSGMRHLFGTWKGVFPPQ
SLQLIEKELGFQSAANRSSSLEPDPQSQRPARSIHVNPEYLEARQKLQQSSVAKGPTIDT
KLINTPEDINRQDRTSANITSMRAHTNSRHKNIQQAQSSMEGSICENERAPYNDYDSCEI
FNEKGFDNNRNGFSTKCENPKSSTKKPANADGKLQSANNIAVKKFGQLNRSWKNSDEEEY
MWGGMNSRLPNSVKSGGGSKRDPRSPPEPEKTGFENRLQKSQGLSANGVSTSVNSILKPS
SLDGFPPSAVTGLQRHTPAPSIPIYHSSRILNNITAQDYKPTVSRGQKNTGPASYSSQDS
FHTDDSQKTQDPLHSHTKKHGPTQADLPPVTSILSTLVAKGWISASKPDLPSDEKIQKDE
NTPHKGPVPEKRKSPLRKDDPSSIEDVKSVIGFEFKPDVIRRPHPAVISQLIIDELPHQC
HICGLRFKLVERFDRHIVWHTLNNPELNTLNKSSRRWFTSSEDWVNGKLEMRSSDQTMGP
VLIDGEQMVVADETQCVCVLCGEVFDDFYFQELGTWMFRKAVYLNIKDGDIGDTYGPIVH
AHCVSENSISDLGLLSDVEREGE
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggagatggatagtagttctagaggtagacaatttgatagatcatctagagatatgaag
aaaccgagacttaataataacggtaggccggtggcggtagggttccggcagagtgccgag
agagagagagatttagaaaacagcagaggaggttatcatccgcaggcgttatcgcagttg
cagctgcagcagcagcatcaggagctggtggatcagtacatgacggcgttggcggagctg
acgtttaactcgaagccgattattacgaatttgacgattattgctggagagaatgtgcag
gctgctaaagctatagctgctgccatctgtactaatattcttgaggtcccgagcgatcaa
aagctgccatcactataccttcttgacagtattgtgaagaatattggcagagattacatc
agatactttgctgccagactacctgaggttttctgcaaggcatataaacaggttgattca
gttgtacgttccggaatgcgccatcttttcggtacttggaaaggtgtattcccgcctcag
tcactacaacttattgagaaagagcttggttttcaatcagctgcaaatagatcatcttct
ttagagcctgatccgcaatctcaacgccctgctcgaagtattcatgtgaatcccgagtat
ttggaggctagacagaaacttcaacagtcgagtgtggcaaaaggtccaactattgacaca
aagctgattaacacaccggaggatattaatagacaagacagaacatcagccaatattact
tctatgagggcccacacaaactctcgccataagaacattcagcaggctcaaagtagcatg
gagggcagtatttgtgagaatgaacgtgcaccatataatgattacgattcatgtgaaata
tttaatgaaaagggatttgacaataatagaaatggcttttccactaagtgtgaaaatcct
aaatcctcaaccaagaaacctgcaaatgcagatggcaaattgcagtctgcaaataatatt
gcagttaagaaatttggtcagttaaataggagctggaagaattcagatgaagaggaatac
atgtggggtggtatgaactcacggttaccgaattctgttaaatccggtggtggctcaaag
cgggacccgaggtcaccccctgagcctgaaaagacgggttttgagaatcgtctccaaaaa
tcacagggtttatctgccaacggggtatccacatcggttaactcaatattaaagccctcg
agcctagatgggtttcctccaagtgcagtaacgggcctgcaacgacacactcccgcaccc
tcgatcccgatttatcattcaagtagaatactgaataatattactgcccaagattataaa
cccactgtatctcggggacagaaaaacacaggacctgctagttattcttctcaagattct
ttccacaccgatgattctcaaaaaacacaggacccgctgcattcacataccaaaaagcat
gggcccactcaagcagacttgccacctgtcacgagtattttgagtacactggttgccaaa
ggctggatttctgcatcaaagcctgatcttccatctgacgagaaaattcaaaaagatgaa
aatacccctcacaaaggacctgtaccagaaaagaggaaatcacctcttagaaaggacgac
ccatcttccatcgaagatgtaaaaagtgttattgggtttgaatttaagcctgatgtgatt
cggaggccgcatcccgctgtaataagtcaactcattatcgatgaacttccacaccagtgt
cacatatgcgggttacggtttaaacttgtggaacggtttgaccgacacatcgtgtggcat
acactcaacaaccctgaattgaacacactcaataaatcatcgaggaggtggttcacgagt
tctgaagattgggttaatgggaagcttgaaatgcggtctagtgatcagaccatgggtccc
gtgcttattgatggtgagcagatggttgttgctgatgaaactcagtgtgtgtgcgtgttg
tgtggtgaggtgtttgatgacttttatttccaagaattgggtacatggatgtttagaaaa
gctgtgtatcttaacatcaaagacggggatattggtgatacttacgggcccatagtgcat
gcacattgtgtatcagaaaattctatttctgatttgggattacttagtgatgtcgaaaga
gaaggcgagtaa
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