Bidens hawaiensis: 143560239
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Entry
143560239 CDS
T11418
Name
(RefSeq) uncharacterized protein LOC143560239
KO
K06100
symplekin
Organism
bhw Bidens hawaiensis
Pathway
bhw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143560239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhw03021
]
143560239
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143560239
Transcription machinery [BR:
bhw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
143560239
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
143560239
U7-dependent histone pre-mRNA processing factors
143560239
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
Adaptin_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
143560239
NCBI-ProteinID:
XP_076904696
LinkDB
All DBs
Position
Unknown
AA seq
1345 aa
AA seq
DB search
MVGMISMERFSGLFESAKFSSDVPSKLETLRKLKDEFSLAVEDHPHLLTHFFPHLLDLHT
DRSSPVRRFVAEIAGEVGLNNTDLLPDIVPLLLTLLRDGTPAVARQAITCGISLFRRTLM
KIAIQGLYSSEVDDSLESSWLWILKLKDEIYTMAYQPETDGRKLPALKFVEAVTLLYTAD
PSASTEPPENHTSGDEFNIAWLRGGHHILNVAELSAEASKNLSLLLDQLRYPAVKSHSNM
VVIVLIKSLSEIAKKRPSFYGRILPVLLGLDPSSSAVKVGHVSGVHHALKNAFLTCLKCT
HPGAAPWRDRLVGSLREMKAGELAEEALQQVLRGNSPIRQDIKPSIEAYDAVHSTAVRKR
PEPQDVNDLNKDDDVPGKRVKPTPNLNEDMKGNNGNSSKPTTTKQNVDNGPVQQLISMFS
SLVAQGEQSAAMLEILISSISADLLAQVVMANMPNLPLVCPKEEGEKESLNTGSHPAAQV
NNLSAYFTDIISKATNSQVTHSAPDTHIDEKPEMEVEPPAVNDSDAADFTSNQALVPLGP
PVSYNLPSIPTVGLGIPSEDIDIGELEDGIPGLESSSKNDGMPEITKMDTSPVICPDLEE
KSQKQITKMDTSSVDIVPSVSTDKSDELSPKAAMAETNSNNSSTATSLQLTPKIVLPKMS
APVVNLTDEQKDNIQKLAFTHIIDAYKHIAVSGGSDLRFSLLSYLGVEFPLELDPWKLLQ
THILSDYTNHEGHELTLRVLYRLFGEAEADHDFFSSTTATSVYEMFLLKVAEALRDSFPP
SDKSLSRLLNEVPYLPKSVIKLLESLCVPGNSDKDEELHSGDRVHQGLSIVWSLILLRPP
TRDACLKIALQSAVHHLEEVQTKAIRLVANRLYPIPSISQQIEDFAKEKLLSAMNGDNSI
TDGSNTELTVDTQMERPLTESVSAVSKDSSSDAGQLSTSENIPSSSVSDAQRCMSLYFAL
CTKKHSLFCQLLVVYKNMSKAAKQAFSVQIPKLVRTIGASSQLLEIIADPPAGSENLLMQ
VVQTLTDGAVPSPELIATIKKLHDTKLKDAEILIPVLPFLPKDEILQIFSCFVSLPLDKF
QAALACILQETSQGGSVLTPAEVLIAIHGIDPEKDGIPLKKVTDACNTCFQQRQIFTQQV
LAKVLNQLVEQIPLPLLFMRTVIQTISAFPSLVDFIMEILSRLVSKQIWKNQKLWVGFLK
CAQLTKPQSFSVLLQLPPAQLEIALNKQPVLKGPLASYANQPDIRTSLPRSILVVLGIQQ
TDSQGQTTQSQTLAQAQSQTQSQAQSHTQSQVQSHTQSQAQSHTPTQAQSQAQSQTQSPA
QSQTADTGNSVKDAATEEPKQSSST
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaatgatttcgatggagaggttttctgggctgtttgagtcggccaaattctcg
agtgatgtcccgtcgaagctggagacgttacgtaagctcaaagatgaattcagtctggca
gtagaagaccaccctcacctgctcactcacttcttccctcaccttctcgatcttcacacc
gatcgctccagtcctgttcgcagattcgttgcagagattgctggtgaggttgggttgaac
aatacagatttattacctgatattgtacccttattgttaactctgttaagagatggtaca
cctgcggttgctagacaggcgatcacatgtggaatcagtttattccgacgcactcttatg
aaaattgcaattcagggtttatattcaagtgaggttgatgattctcttgagtcatcatgg
ttatggattttgaagcttaaagatgaaatatatacaatggcataccagccggaaactgat
gggagaaagttgcctgcgctgaaatttgttgaagcagtaacgcttttatatacagctgat
cctagtgcttctactgaaccacctgaaaatcacacttctggagatgaatttaacatcgca
tggcttcgtggaggtcatcacatacttaatgttgctgagttatcagctgaagccagtaag
aatttgagtttgttgcttgatcagctaaggtatccagctgtcaagtcacatagcaatatg
gttgtcattgtgttaattaagagcctttcagagattgctaagaaaaggccttcattttat
gggcgtattcttcctgttttacttggattggatccatcaagctctgctgtgaaagttggt
catgtttctggtgtccatcatgctttaaagaatgcttttctcacctgcttaaaatgcaca
caccctggtgctgcaccgtggcgagatcgtttagttggttcacttagggaaatgaaagcc
ggtgagttagctgaagaagctctccagcaggttcttaggggtaattcaccaattagacag
gatataaaaccctcaatagaagcatatgatgctgtgcactccactgcagttaggaaaagg
cctgaaccacaggatgttaatgatctgaataaagatgatgatgtacctggaaaacgtgtc
aaaccaacacctaatttgaacgaggacatgaagggaaataatgggaattcttcaaaacca
actacaaccaaacagaatgtagacaatgggcctgtgcagcagcttatttctatgttcagt
tcattagttgcacagggtgaacagtctgctgcaatgctagaaattcttattagtagtatt
tcagccgatttactagctcaagtagttatggccaatatgccaaatcttcctcttgtttgc
cctaaagaagagggtgagaaagagtcattgaacaccgggtcccaccctgctgcacaggtt
aataatctgtctgcatactttacagacataatatcaaaagccaccaattctcaggttacg
cattctgctcctgacacacacattgatgagaaacctgaaatggaggttgaaccgcctgca
gtaaatgatagtgacgcggcagattttacttctaatcaagccttggtacctttgggccca
ccagtgtcttataatttaccatctataccgactgttggtttaggtattccatctgaagat
atagatataggggaacttgaagacggtatacctggtctagaatcatcatccaagaatgat
ggaatgcctgaaattaccaaaatggacacgtcaccagttatttgtcctgacttggaagaa
aaaagtcaaaagcaaattaccaaaatggacacatcatcggtggatatagttccttcagtg
tctactgacaaatctgacgaacttagtccaaaagcagccatggcagaaacaaacagcaat
aattcctcaacagcaacttctcttcagttaacacctaaaattgttctcccaaaaatgtct
gcacctgttgttaacctcactgatgaacagaaggataacatacagaaattagcctttaca
cacattattgatgcttataagcatatagcagtttcaggtggctcagaccttcgtttttct
ttactttcatatctaggagttgagtttcctttggagttggacccttggaaacttcttcaa
acacacatactctcagattatacaaaccatgagggccatgagttaaccttgcgtgtcctc
tatagattatttggagaagcagaagcagaccatgacttcttttcgtcaacaaccgcaact
tccgtttatgagatgtttcttctgaaagtggcagaagcactcagagattctttcccaccc
tctgacaaatctttgagtagattactaaacgaagttccgtacctgccaaaatcagttatt
aaattattagagagcttgtgtgttcctggaaacagtgataaagatgaagaactgcacagt
ggagatagagtgcatcaaggcctcagcattgtttggagcttaattcttcttagaccacct
actagagatgcctgcttaaaaattgctttacagagtgcagtgcatcacttggaggaagta
caaacgaaggcgatacgtctggtggcaaacaggctttatcctataccctccatttctcag
caaattgaagattttgcaaaggaaaagctactatctgcaatgaatggtgataattcgatt
actgatggatccaataccgaattaacagtggacacacagatggaaagaccgttaactgaa
tcagtaagtgctgttagcaaggatagttcctctgatgctggccaactgtctacatctgaa
aacattccatcttcttcagtaagtgatgcacaacgatgcatgtcactgtattttgccctt
tgtacaaagaaacactctcttttctgccaactgttagtcgtctacaagaacatgtcaaaa
gcagcaaaacaggcattcagtgtccaaatccctaaactagttcgcacaattggcgcatca
tctcaacttcttgaaattattgcagatccgccagctggaagtgagaatcttctgatgcag
gttgtgcaaacactaacggatggggcagttccatctcctgaattgatagctactattaaa
aagttacatgacacaaagttaaaggatgctgagattcttattccagtattaccgttcctt
ccaaaggatgagattcttcagatcttttcttgttttgttagtcttccactggataaattt
caggctgcacttgcctgtatcttgcaggaaacatctcaaggtggttcagttcttactcca
gctgaagttctgattgctattcatggcattgatcctgaaaaagatgggattcccctcaag
aaggttacggatgcatgcaacacttgctttcagcaacggcagatatttacacaacaagtt
ctagcaaaagttttaaatcagctggtggagcagatacctctaccattgctgttcatgcgg
acagtaatacagacaattagtgcatttccctccctggtcgattttattatggagattctc
tctcgtcttgttagcaaacagatttggaaaaatcaaaagctctgggtaggattcttgaaa
tgtgctcagctaacaaagcctcaatctttcagtgttctactccagcttcctcctgcacag
ctggaaattgcattgaataaacagcccgtactcaagggtcccttggcttcctacgcgaac
caaccggacattcgaacatcactcccaaggtcaatactggtggttcttggaatccaacaa
accgatagtcaagggcaaaccacccaatcacagacgctggctcaggcccaatcacagaca
cagtctcaggcccagtcacatacgcagtctcaggtgcagtcacatacacagtctcaggcc
cagtcacatacaccgactcaggcccaatctcaggcccaatcacaaacacagtcaccggcc
cagtcacagacagcagacacgggcaattcagtgaaagatgcggcaactgaggaaccaaaa
caatcaagtagcacctga
DBGET
integrated database retrieval system
